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2024-04-24 10:15:41, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio si:dkeyp-2e4.7 (si:dkeyp-2e4.7), mRNA. (1009 bp)
taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaatcaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
position 477
NM_001386665.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nucleolus and neural progenitor protein (nepro), mRNA. (1699 bp)
aatgtggtgataaccagcatgctcagtcgtctctgggtttttttcagaggtattctgcgagccctcatccccatgtacagaagaaactgtgaactgctccagaaggtgtctcagtctcagcccatggcctatctgactgacttcactctacctgaggacctgaaagacttcctgtgcctcacataccctgatctaaagattgaagaagttaccaaagacctcttaaagggcacaagaggaaaaagaaagtccaaattttctctcctttccaagttgtttggggagaccgagcaacaagaagagattggagaaggggagagagatctgatgccaatattaagcgctggacattatgaagtttctagcctggacctcggagcagcagtttcacaacgacggaccgattactcagatgtgtcaccctatggactggacataaaggctatgcttcagcagtcttccaaaaccaccaaacagaaatctttggagcaacagatgaaattggacagctccagtaaagcatcattgtgtcagaagaggacgtttttgaagtcactgaagaagacgtcttcttttagaaacatggcagccctattaaag...
position 820
Synonym: fi11c01; si:dkey-22a1.3; wu:fi11c01; zgc:112065
NM_001017650.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkeyp-2e4.7 (si:dkeyp-2e4.7), transcript variant X1, mRNA. (1047 bp)
taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaatcaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
position 508
XM_021480895.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio pirin (pir), mRNA. (1927 bp)
atttacacgaggactccaaccatgtatcttgactttttgctgaagaaagatgcaaaacacatgcagcctgttccaaaaggttggacagctttcatctacaccctcgcaggttctttatgcactggcccagacaatgatttgcggacaatagagccacaccacacggtggttttggaaggtggtgactgcgtcagaatggaaaacaaggctgctgaggactctcactttgtgttaattgctggcgaacccattaatgagcctgtagttcagcatgggccctttgtcatgaacacacaagaagagattgacaagaccatctcagactacagatcagccactaatggatttgagagagcaaaagtctggcgatcaaagattggtcaacagttttaaagtgtcttcaagatccttctctgagggaatatatctactttggtgcctttaccttcagcttcagcagctccgaacatacattaggccagggatcactaaacttgttcctggtggtctggtgtcctggagattttagctccaaccctaatcaaacacacctgaacaagcgaatcaaggtcttactaggtatacttgaaacacccaggc...
position 1128
Synonym: zgc:92778
NM_001002550.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio vimentin (vim), mRNA. (1824 bp)
atcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctgcaagaagagattgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtgaccaaacctgacctgaccgctgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgcccgaaacaatgaagccatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgac...
position 699
Synonym: cb28
NM_131872.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio GTPase IMAP family member 8-like (LOC108179126), mRNA. (2557 bp)
ttaaactttttttccaaatacaaacatcattttgccacggcaggacatgttgttggaggaattgctatcggagctgcagttttatctggagttggagttggagctgctgctggagctggtttagcagctttttgtgctggagtaggaagtgtttcagttgctggagctgctgttggaggtgttgttggaggtgttgttggaggtgttgctgctagcaaatatgaggaagaaataaagtggaagaagagaagaagagaagaagaagagagagaacaacaagttgacaaaaaaatacaagaagagattgagagagcaataaaggagattgatgagagattcagagaagaaatggtagctaaaaatcttaaagcagagaaacagagtgaggaagaacagagaagacaagagaaacaaagactagaggagattaagagagtaagagaaaagacagaggagagaatcagagcagaaattgaagctaaaaagcagagagacggagtaaggaagaacagagaagacgagagaaacaaaaacaagaggagttagagtgataaaagagacagaggagagagtcagagcagaaaatgaggctaaattaaa...
position 1991
XM_017354872.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio general transcription factor IIIC, polypeptide 4 (gtf3c4), mRNA. (2672 bp)
gagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcagcagctaagatgcttgatgctcacagtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaa...
position 1435
XM_021473407.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio general transcription factor IIIC, polypeptide 4 (gtf3c4), mRNA. (2680 bp)
gagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcggcagctaagatgcttgatgctcactgtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaa...
position 1443
XM_691843.8 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio transient receptor potential cation channel, subfamily M, member 4b, transient receptor potential cation channel, subfamily M, member 4b, tandem duplicate 2 (trpm4b.2), mRNA. (3990 bp)
AUTHORS Saito S and Shingai R. TITLE Evolution of thermoTRP ion channel homologs in vertebrates JOURNAL Physiol Genomics 27 (3), 219-230 (2006) PUBMED 16926268 aaactcacaacaaacagggaattgataagatcctaaaaccaccaccatgaacgagaaggacattgaggagggcggagtggccgtgatgccgaaagatctaagctggattccaactttcttcaagaagagattgtgcacaacgtttgtggaggactccttcagtaacggaggtctgtgtcagtgcggggcggcacgagaccatcacccatcagtggcactgggcgataacttcagcacagcagtggtcagtcagtggttcagcactcagcactcctctgaacagcccactgacgcttatggagaattggacttcaataacagtaggaaaagagacagctactttctgcgtctgtccagcaccacagatcctgccaaagtgtttgacctgatgaaggagcactggaagctgcaacagcctaacctggtggtgt...
position 121
Synonym: TRPM4b1; trpm4c
NM_001282153.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio FYVE and coiled-coil domain containing 1a (fyco1a), transcript variant X3, mRNA. (3764 bp)
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3279
XM_017353733.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio FYVE and coiled-coil domain containing 1a (fyco1a), transcript variant X2, mRNA. (4866 bp)
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3206
XM_009297091.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio FYVE and coiled-coil domain containing 1a (fyco1a), transcript variant X1, mRNA. (4939 bp)
gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
position 3279
XM_009297090.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio CDC42 binding protein kinase alpha (DMPK-like) a (cdc42bpaa), mRNA. (7710 bp)
ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
position 5910
XM_021467292.1 - Danio rerio (zebrafish) - NCBI - UCSC

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dr/caagaagagattg
lang : en | div : | spe : dr | query_string : caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=0&format=json
0.102 | 0.023 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.103 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]