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2025-04-14 04:02:23, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Xenopus tropicalis vimentin (vim), mRNA. (1795 bp)
LOCUS NM_001134803 1795 bp mRNA linear VRT 22-DEC-2019 DEFINITION Xenopus tropicalis vimentin (vim), mRNA. ACCESSION NM_001134803 VERSION NM_001134803.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC168783.1. ##Evidence-Data-START## Transcript exon combination ::...
Synonym: vim-a; vim-b
NM_001134803.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis vimentin, gene 2 (vim.2), mRNA. (1461 bp)
LOCUS XM_002940960 1461 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis vimentin, gene 2 (vim.2), mRNA. ACCESSION XM_002940960 VERSION XM_002940960.4 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030677.2) annotated...
XM_002940960.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis selenoprotein S (selenos), mRNA. (1014 bp)
IDENTIFIER PRIMARY_SPAN COMP 1-31 EL837085.1 12-42 32-1014 BC088768.1 1-983 FEATURES Location/Qualifiers source 1..1014 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="3" /map="3" gene 1..1014 /gene="selenos" /gene_synonym="AD-015; ADO15; SBBI8; sels; seps1; vimp" /note="selenoprotein S" /db_xref="GeneID:496967" /db_xref="Xenbase:XB-GENE-1007235" exon 1..127 /gene="selenos" /gene_synonym="AD-015; ADO15; SBBI8; sels; seps1; vimp" /inference="alignment:Splign:2.1.0" CDS 49..618 /gene="selenos" /gene_synonym="AD-015; ADO15; SBBI8; sels; seps1; vimp" /note="UGA...
Synonym: AD-015; ADO15; SBBI8; sels; seps1; vimp
NM_001011476.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/xt/symbol%3aVIM
lang : en | div : | spe : xt | query_string : symbol:VIM | format : html | download : 

0.000 | 0.000 | search_start;
0.160 | 0.160 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(full_search:symbol,synonym:VIM)?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.253 | 0.092 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(full_search:symbol,synonym:VIM)?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.253 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]