GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2025-06-03 06:27:40, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Xenopus tropicalis pyruvate dehydrogenase complex component X (pdhx), mRNA. (1935 bp)
tgcagcggctccagcgcctgtctcaggccgtccattctttccccccatgtccatccctggaaagccccatacagagggcatgttttctgaaataccagccagcaacatccgaaaagtgatagccaagaggctaatggaatccaaatccagcatccctcacgcctatgccacgaccgactgcgacatgggagccgtgatgcgactgaggaaggagctggccaaagataatatcaaggtgtcggtgaatgactttatcatcaaggccaccgccgcagcacttaagcaaatgcctgaggtcaacgtgacctggaacggagagggagccgcgccactggaaaccatagacatctccatcgctgtggccaccgaccgtgggctcatcacacctatcatcaaacaggcagccagcaaggggatccaggaaatcgctgctactgcaaaggtcctggcacagaaagcacgagatggaaaacttttacccgaagaatatcaaggagggtcattcagcatttccaatctgggcatgtttggcatcaccgggttcagtgcagtgatcaaccccccgcagtcctgcatcctggcggtgggaagatcccgggt...
position 1132
XM_031900436.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

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Debug Info:

Redirect URI : https://ggrna.dbcls.jp/xt/iub%3aaggtcannrtgacct
lang : en | div : | spe : xt | query_string : iub:aggtcannrtgacct | format : html | download : 

0.000 | 0.000 | search_start;
0.110 | 0.110 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.251 | 0.141 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.252 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]