GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Xenopus tropicalis natriuretic peptide B (nppb), mRNA. (767 bp)

agcagaggacagtaactggactgcagagaaggtgtaagagctacaaagctggcatcagttgcaatggagtggaaagtctttttgttctgtggctccctgctatttgtctccttacagttccagagctgtgcagcccacccagttatggacttggacaaagacagagacctggacaccttaaagggggtactggagaggctggaagagaaactggctgttatggaagctttggacgcagatgctacaaatcctagttcagaggatgccgatgctgctcggctggctgtaatagaccaagaagagattgcctcccagtcgttcccagagccccagctgccgcttaaggactcattcctcaaagggttaaggtcgctgcgaaaccccaaaatgatgaggggctccggctgctttggaagacgaatagacagaatcgattccctgagtggaatgggctgtaatgggtccaggagatattgatccaggaaggatttcagattctcttctgtttctttatgccctataaactttgcatagacatttgtgttctatttaagtctttgttcttatttatttatttatgactatttatttgatatttta...

position 406

XM_002937525.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), mRNA. (2135 bp)

aggcagcatgaacaagatgtagcacgtgttgttaaaattaaggatagtgaagtccagcgtttacagtgcactctgaatgtgctacgggacggtgctgcagataaggtgaagacagctcttctaaatgaggccagagaagaagcgaggaaagcctttgataatgagcgaactaagttacaacaggagatcctggcgttaaagactgagaagaaacaaatagaggagagtctgaacaatgtcatgcaagcggacaagatgaaggccaccgacctgcgtatagcttaccagactcaccaagaagagattgctagaataaagcgggaatctgaaaaggatatccgtaggctgatggaggaaataaaagccaaagagagagtgatcctggctctagagaaggaggtgggggtgcaggcgggccacacacagaagttgctcttgcagaaggaggccctggatgaacagctggtccaggctaaagaggctgagcgctaccacagcagcccaaagaaagagctgcctccgggtgtttgcgacatctctgagctccttggaaatggggagccacatgtcgatgaccgagaccttagaagatttcagcta...

position 703

NM_001126760.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X8, mRNA. (2232 bp)

position 797

XM_031895271.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X7, mRNA. (2847 bp)

position 798

XM_018090828.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X5, mRNA. (2874 bp)

position 723

XM_031895252.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X4, mRNA. (2876 bp)

position 725

XM_018090821.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X1, mRNA. (2949 bp)

position 798

XM_018090813.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X3, mRNA. (2969 bp)

position 818

XM_012955880.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X6, mRNA. (2980 bp)

position 798

XM_031895258.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis janus kinase and microtubule interacting protein 1 (jakmip1), transcript variant X2, mRNA. (2982 bp)

position 831

XM_012955890.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis cytochrome P450 family 2 subfamily G member 1, pseudogene (cyp2g1p), mRNA. (3447 bp)

atccctggtcctcatcaaaaggcaatgaagcatttggttgacctcaaggcgtttgtccaacagagagtgagggaaagcaaggagattttggacatcaattcacctcaacactttatagactgctttttaatcaagatgcaggaggaacaggagaatccccactctgagtttcatatggacaacctgataggatctgctttaaatttattttttgctggtacagagactgtcagcacaaccctacgatatggaatcttaattctgctcaaatggccacatatacaaggaaggatccaagaagagattgacgatgtgataggccgccaacagtgtccaaaaattgaagacagaagcaagatgccttatactgatgcagtcatccatgagatccagagatttagtgacattgttcctacagggctcccccacacagcaacacaagataccacattcaggggccatactatacccaaggggacagatgtatttgcgttgctaaccactgtgctgaaggatcctgaggtgtttcaaaatccagaggaatttaatccagagcgcttcctagatgaaaatggtatacttaagaaaagccaagctttc...

position 1330

XM_002939382.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis golgin B1 (golgb1), transcript variant X2, mRNA. (12104 bp)

attgcacagttgcaatatcgtataaatgaactggagaacaatacaaaggaaaatagttttgaaaaaataagtgatgaaataaaggtcttacgagaagataagtttaaggctgaaaaatggatatctaatttgttagaggaaataaatcaactgcaagatcgtatacatgaactggagaacaatacaagagataatggtcttgaaaaaatgagtgatgacataaaggtattacaagaagataagtttaaggctgaaaaacagatatgtaatttgctagagaatattagtcaactgcaagaagagattgaagagttaaaaaaaataaatcaagaagtacaaattgctgtggctaaggcaattaaagaaaaggagacgacagagttggaaaaggatgagttggaggaacgcctcatgaaccagttggctgagctcaatggaagtatagggaattaccaacaggatgccatggatttacaaataaaaaatgactgcttgcaaaaagagttacaggacctccagtttgaattagaagaagagaagaggaaactagagaggcaaaaagcagaagcactttctcatgttcagaaagaatatgtagat...

position 6030

XM_018092372.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis golgin B1 (golgb1), transcript variant X1, mRNA. (12167 bp)

position 6093

XM_012966897.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

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0.000 | 0.000 | search_start;
0.074 | 0.074 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.100 | 0.026 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.102 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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