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2025-04-14 04:26:59, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Xenopus tropicalis ribosomal protein S5 (rps5), mRNA. (686 bp)
protein_id="NP_001016992.1" /db_xref="GeneID:549746" /db_xref="Xenbase:XB-GENE-919703" /translation="MSDWETVPVGAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKFLPHSGGRYAAKRFRKAQCPIVERFTNSLMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 50..610 /gene="rps5" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(50..52,137..145,149..160,257..259,269..271) /gene="rps5" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD:271246"...
AA_position 192
NM_001016992.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis titin homolog (LOC101735255), transcript variant X4, mRNA. (5024 bp)
alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:101735255" CDS 224..2956 /gene="LOC101735255" /codon_start=1 /product="myb-like protein X isoform X4" /protein_id="XP_031758241.1" /db_xref="GeneID:101735255" /translation="MAKQSIDSKDDAKEKKNKLKEKIGEVLEKKDELKEKKDELKEKRDELKEKIGELKEKNDELKEKKDKLKEKKGELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEKKDELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEEKKEQKEKTENIIVNNKKQIDDMMKKKDKLKEEKKVQKAKTENIIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKGKTENVIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKEKTENVIEKSDDIVNNKEQIGDIRGNEDELKTSVEETGSDCIHDPAELTLTTESM...
AA_position 30
XM_031902381.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis titin homolog (LOC101735255), transcript variant X3, mRNA. (5023 bp)
by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:101735255" CDS 223..2955 /gene="LOC101735255" /codon_start=1 /product="titin homolog isoform X3" /protein_id="XP_031758240.1" /db_xref="GeneID:101735255" /translation="MAKQSIDSKDDAKEKKNKLKEKIGEVLEKKDELKEKKDELKEKRDELKEKIGELKEKNDELKEKKDKLKEKKGELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEKKDELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEEKKEQKEKTENIIVNNKKQIDDMMKKKDKLKEEKKVQKAKTENIIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKGKTENVIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKEKTENVIEKSDDIVNNKEQIGDIRGNEDELKTSVEETGDVSIEETGKDVSD...
AA_position 30
XM_031902380.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis titin homolog (LOC101735255), transcript variant X2, mRNA. (5026 bp)
by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:101735255" CDS 223..2958 /gene="LOC101735255" /codon_start=1 /product="titin homolog isoform X2" /protein_id="XP_031758239.1" /db_xref="GeneID:101735255" /translation="MAKQSIDSKDDAKEKKNKLKEKIGEVLEKKDELKEKKDELKEKRDELKEKIGELKEKNDELKEKKDKLKEKKGELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEKKDELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEEKKEQKEKTENIIVNNKKQIDDMMKKKDKLKEEKKVQKAKTENIIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKGKTENVIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKEKTENVIEKSDDIVNNKEQIGDIRGNEDELKTSVEETGDVSIEETGKDVS...
AA_position 30
XM_031902379.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis Nedd4 family interacting protein 1 (ndfip1), mRNA. (2490 bp)
inference="alignment:Splign:2.1.0" CDS 99..734 /gene="ndfip1" /gene_synonym="n4wbp5" /codon_start=1 /product="NEDD4 family-interacting protein 1" /protein_id="NP_001027505.1" /db_xref="GeneID:613097" /db_xref="Xenbase:XB-GENE-961957" /translation="MSEQSSSRYQQLQNEEEPGENPQASTDAPPPYSSIAGESSGLFDYKDELGFPKPPSYNVATSLPSYDEAERTKAEATIPLVPGRDDDFVARDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTSSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPDNFSTLPRTRVLFIY" misc_feature 99..242 /gene="ndfip1" /gene_synonym="n4wbp5" /note="propagated from UniProtKB/Swiss-Prot (Q4V786.1); Region: Disordered. /...
AA_position 46
Synonym: n4wbp5
NM_001032334.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis titin homolog (LOC101735255), transcript variant X1, mRNA. (5228 bp)
by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:101735255" CDS 224..3160 /gene="LOC101735255" /codon_start=1 /product="titin homolog isoform X1" /protein_id="XP_031758238.1" /db_xref="GeneID:101735255" /translation="MAKQSIDSKDDAKEKKNKLKEKIGEVLEKKDELKEKKDELKEKRDELKEKIGELKEKNDELKEKKDKLKEKKGELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEKKDELKEEEDLKEKIEDIMLGKVDDINNSIGEIKVQKHDIMEKKDELKEEKKEQKEKTENIIVNNKKQIDDMMKKKDKLKEEKKVQKAKTENIIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKGKTENVIEKRDDIVNNKEQIDDIMKKKDELKEEEKEQKEKTENVIEKSDDIVNNKEQIGDIRGNEDELKTSVEETGDVSIEETGKDVS...
AA_position 30
XM_031902378.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis homeobox B5 (hoxb5), mRNA. (1432 bp)
hox2.1; hox2a; hu-1; Xhox1B; XlHbox4" /codon_start=1 /product="homeobox protein Hox-B5" /protein_id="NP_001094494.1" /db_xref="GeneID:100113366" /db_xref="Xenbase:XB-GENE-1005991" /translation="MSSYFVNSFSGRYPNGPDYHVLNYGTGSSSNLSGSYREAAGSMQPSAYGYNYNGMDLSVSRAAASSSHYGDSAFPGQESRFRANQSCPLATPDPLPCAKSHKDELSPTDPATSAGSSAQFTEVEETSASSETEESSTPRSSAPPRALQENSSPGAAGTDGQNPQIFPWMRKLHINHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATGSSAFQP" misc_feature 595..765 /gene="hoxb5" /gene_synonym="hho.c10; hox2; hox2.1; hox2a; hu-1; Xhox1B; XlHbox4" /note="Region: Homeodomain; pfam00046" /db...
AA_position 102
Synonym: hho.c10; hox2; hox2.1; hox2a; hu-1; Xhox1B; XlHbox4
NM_001101024.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis mitochondrial ribosomal protein L15 (mrpl15), mRNA. (1273 bp)
db_xref="Xenbase:XB-GENE-976976" /translation="MAASGGSGEKATELLRCLPRVTLANLRPNPGARHKEKRRGRGIHGGRKSGRGHKGETQRGNQPRLGFEGGQTPFYLVIPKYGYNEGHSFRRQYQPLSLRRLQYLIDLGRIDPAQPIDLTQLVNARGVTIQPLKRDYGVQLVEEGSDIFSAKINIEVQWASQLAIAAVEKNGGVITTGFYDPRSLEVLCKPVPFFMRGQPIPKRMLPPEDLVKYYTDGETRGYLADPRKVLEARKQLAKKYGYILPDITKDELYQMLCTRKDPRQIFFGLAPGWVVNMSEKKILKPTNERLVTYYSS" misc_feature 259..642 /gene="mrpl15" /note="Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; Region: Ribosomal_L27A; pfam00828" /db_xref="CDD:459951" misc_feature 810 /gene="mrpl15" /note="fatty acyl-CoA reductase 2; Region: PLN02503" /db_xref="CDD...
AA_position 249
NM_001126635.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis tumor protein p53 (tp53), mRNA. (2408 bp)
GLMGNTVPTVTSSAVPSTEDYAGSYGLKLEFQQNGTAKSVTCTYSTDLNKLFCQLAKTCPLLVRVERPPPLGSILRATAVYKKSEHVAEVVKRCPHHERSVEPGDDPAPPSHLMRVEGNSKAYYMEDVGTGRHSVCVPYEGPQVGTECTTVLYNYMCNSSCMGGMNRRPILTIITLESPEGLLLGRRCFEVRVCACPGRDRRTEEDNCTKKRGLKPNGKRELSHPPSSDPPLPKKRLVEEDDEETFTLLIKGRSRYEMIKKLNDALELQESLDQQKLSIKCRKCRDEIKPKKGKKLLVKDELQDSE" misc_feature 98..169 /gene="tp53" /gene_synonym="lfs1; p53; Trp248; trp53; Xp53; Xrel3" /note="P53 transactivation motif; Region: P53_TAD; pfam08563" /db_xref="CDD:462520" misc_feature 335..877 /gene="tp53" /gene_synonym="lfs1; p53; Trp248; trp53; Xp53; Xrel3" /note="P53 DNA-binding domain;...
AA_position 355
Synonym: lfs1; p53; Trp248; trp53; Xp53; Xrel3
NM_001001903.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit (mettl14), mRNA. (1645 bp)
non-catalytic subunit METTL14" /protein_id="NP_001007920.1" /db_xref="GeneID:493301" /db_xref="Xenbase:XB-GENE-5813560" /translation="MNSRLQEIRARQTLRRKLLAQQLGAESADSIGAVLNSKDEQREIAETRETSRASYDTSATVSKRKMPEEGEADEEVIEECKDAVEPQKEEENLPYREEIYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELISKSNTPPMYLQADLESFDLRELKSEFDVILLEPPLEEYFRETGIAANEKWWTWEDIMKLDIEGIAGSRAFVFLWCGSGEGLDFGRMCLRKWGFRRSEDICWIKTNKDNPGKTKTLDPKAIFQRTKEHCLMGIKGTVHRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNFNSETYASYFNTPNSPLTGCTEEIERLRPKTPPPKSDRGFGASRGGGRGGPSAGRGERGRERNRGSFRGDRGNFRGRGGPHRGVFAPR" misc_...
AA_position 156
NM_001007919.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis mitochondrial ribosomal protein L38 (mrpl38), mRNA. (1480 bp)
db_xref="Xenbase:XB-GENE-5959674" /translation="MPNEQFEGQDVQSLEKYRSFARYYQATEQEQKRSQWWRTYRQYQQEGEDTTREKADIGFPHFTPRNAKTTQARKQILRENHRNPELERAARLRTLRIPLDEVQAEWERTTGRSHVQRVAEHYGVFKDLFGDATFVPSVTLRVQYNKGDEFLMPVYHGNLVTPAEASGPPEVTFEAEEGSLWTLLLTNPDGHLKETDSEYVLWLVGNIPGNQVHSGEQICHYFPPFPAKGTGYHRHIFLLFKQDRRIEFKDELRPNPCHSLKLRTFKTLDFYRKYEESLTPAGLAFFQCAWDDSVTQVYHQLLNMREPVFEYERSPKYHPKQVKYPHGKPLRYLDRYRDSEEPTYGIY" misc_feature 481..933 /gene="mrpl38" /gene_synonym="hspc262; mrp-l3; rpml3" /note="PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes; Region: PEBP_euk; cd00866" /db_xref="CDD...
AA_position 249
Synonym: hspc262; mrp-l3; rpml3
NM_001017146.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis centrosomal protein 41kDa (cep41), mRNA. (2319 bp)
testis specific gene A14; testis specific, 14; Testis-specific gene A14 protein" /codon_start=1 /product="centrosomal protein of 41 kDa" /protein_id="NP_001016937.1" /db_xref="GeneID:549691" /db_xref="Xenbase:XB-GENE-980648" /translation="MSAKRSIGDSEILKKRIPQNLKYQHIKTRLDTGNSMTKYLEKIEEIKKNYRYKKDELFKRIKVTTFAQLVLQVASVSEERESGEMTTDELQRLEDNSSVISDTEFLTDRTNGKGSPVNDSKSPIQFIDSERGEECIHTSRSTLQSVISGVGELDLGNQADKKKESLQSSSALDKPYEDCPFLLLDVRDRDSYDQCHVVGAKNYPVAMLSRTMNPFTPEILEYRNAHGKIIILYDEDERIASQAATTMCERGFENLFMLSGGLKVISQKFPQGLTTGSFPVTCLVPPTQMKSALKRTPKDPIVPAEDKWRFSSQDLEMIENHLENMLMSTSTPSRLRMDSRNSKVPSSASSARSQSSTSSHS...
AA_position 54
Synonym: tsga14
NM_001016937.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis SERPINE1 mRNA binding protein 1 (serbp1), transcript variant 2, mRNA. (4006 bp)
db_xref="GeneID:407908" /db_xref="Xenbase:XB-GENE-494265" /translation="MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEGAGGPGQGTGKTAAQAAKQPKKESQKDRKNPLSEKEEKSQAPVPIKKEAIRRVGRRPDQQQQPPQQPPTPPQSSQGEGKPVDRRQSDRRPPRERRFEKPTEEKGEAGEFSVDRPIVDRPIRGRGGPGGRGGRGGRGRGLGRGDGFDSRGKREFDRHSGSDRAGPKHEDKRGGSGSHNWGTVKDELSELDQSAVTEETPETEEHPAVDSENKENEAEEVKEEGPKEMTLDEWKAMQDKERSKVEFNIRKPNEGADGQWKKGFVLHKAKSDEVHAESDALDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRARGGRPSRGGRTDKSNASAPDVDDPEAFPALA" misc_feature 141..>422 /gene="serbp1" /gene_synonym="cgi-55; chd3ip; habp4l; pai-rbp1; pairbp1" /note="Intracellular hyaluronan-binding...
AA_position 237
Synonym: cgi-55; chd3ip; habp4l; pai-rbp1; pairbp1
NM_001016153.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis SERPINE1 mRNA binding protein 1 (serbp1), transcript variant 1, mRNA. (4021 bp)
xref="GeneID:407908" /db_xref="Xenbase:XB-GENE-494265" /translation="MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEGAGGPGQGTGKTAAQAAKQPKKESQKDRKNPLSEKEEKSQAPVPIKKEAIRRVGRRPDQQQQPPQQPPTPPQSSQGEGKPVDRRQSDRRPPRERRFEKPTEEKGEAGEFSVDRPIVDRPIRGRGGPGGRGGRGGRGRGLGRGDGFDSRGKREFDRHSGSDRASSHFSGPKHEDKRGGSGSHNWGTVKDELSELDQSAVTEETPETEEHPAVDSENKENEAEEVKEEGPKEMTLDEWKAMQDKERSKVEFNIRKPNEGADGQWKKGFVLHKAKSDEVHAESDALDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRARGGRPSRGGRTDKSNASAPDVDDPEAFPALA" misc_feature 141..>422 /gene="serbp1" /gene_synonym="cgi-55; chd3ip; habp4l; pai-rbp1; pairbp1" /note="Intracellular hyaluronan-binding...
AA_position 242
Synonym: cgi-55; chd3ip; habp4l; pai-rbp1; pairbp1
NM_001001227.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis DAZ interacting zinc finger protein 1-like (dzip1l), mRNA. (1768 bp)
DAZ interacting protein 1-like" /codon_start=1 /product="cilium assembly protein DZIP1L" /protein_id="NP_001072868.1" /db_xref="GeneID:780329" /db_xref="Xenbase:XB-GENE-991168" /translation="MPTFRFQPRRDGIDWRRFSAIDTERITREVDINTLQESINSITFCNLEGEKCPYCQQPVDPVLLKVLKMAQMIIEYLLYCQEHIHSREAQLEERLGEAEAEHERTKDELAKQAEEMKKVKEESKRRKKMIATQQMLLQAGANNYHKCQLCDKAFMNYSYLQGHIQRRHPEITEIERQKKKQVEQMEDGIEELKSKLLKTQAILEEEREMEHKKRLQEAEEARHREETLKRDFERWREEERSKRQDEMDKIMQQFHSQLQEVTLKNSTYESRFHNLESKNSMVPSLGNLADEEERLELKRLQQGMRNLKEELEQQQSGWKKKLKEVQRDHGVEKQELQYENERLKASMTRDQQAVDQQVTKQMQSLKSQIKEKNKLIQNYELTIEDLSRSREVPQVAQVVLPAGAIKDEA...
AA_position 106
NM_001079400.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis SRY-box 11 (sox11), mRNA. (2007 bp)
MVQQADSLDMDSSQHTEPDTEEGEFMACSPVALDESDPDWCKTATGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLNDSEKIPFIREAERLRLKHMADYPDYKYRPRKKPKVDPSASKPASLAQSPEKSPKSRSAGKKCPKLKPGSHSGGSAKSLTIKSEYGGDDYVFGSPKAASKAAKCVFMDEDDEEEEEDEEEDELQIRIKQEEEDEPLRQYNVAKVPASPTLSSSSAESAEGASMYEDVRNGTRLYYNFKNITKQSTIPQATITLAPAPRSAGTTSPSSHKDELMFDLSLNFTQQNPPVPELGNPNSGNLSLSLVDKDLDSCSEGSLGSHFDFPDYCTPELSEMIAGDWLEANFSDLVFTY" misc_feature 91..162 /gene="sox11" /gene_synonym="sox11-a; sox11-b; XLS13; xls13a; XLS13b; xSOX-11; xsox11" /note="propagated from UniProtKB/Swiss-Prot (Q66JF1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-...
AA_position 303
Synonym: sox11-a; sox11-b; XLS13; xls13a; XLS13b; xSOX-11; xsox11
NM_001008052.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis UBA domain containing 1 (ubac1), mRNA. (2070 bp)
translation="MFVQEEKIFAGKGLRLHICSLDGAEWLEEVTEEITVEKLKEKCLKHCSHGSLEDPKSLTHHKLVHASSERVLSDTKTLAEENLQDNDVLLLVKKRAPPPTPKMAEVSADEKRKQDQKAPDKDAILKATAGLPARSTDRTVAQHNMRDFQTELRKILVSLIEVAQKLLALNPDAIELFKKANAMLDEDDEDRVDEVALRQLTEMGFPESRAVKALRLNHMSVTQAMEWLIEHADDPAADAPLPCENSSEAAGGLATGEAETKPTLGAGAEDPKDELTEIFKKIRRKREFRPDPRAVIALMEMGFDEKEVIDALRVNNNQQDAACEWLLGDRKPSPEDLDKGIDTTSPLFQAILDNPVVQLGLTNPKTLLAFEDMLENPLNSTQWMNDPETGPVMLQISRIFQTLNRT" misc_feature 60..320 /gene="ubac1" /gene_synonym="kpc2; ubadc1" /note="first ubiquitin-like (Ubl) domain located at the N-terminus of coronavirus SARS-CoV non-structural protein...
AA_position 272
Synonym: kpc2; ubadc1
NM_001016826.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis required for meiotic nuclear division 5 homolog A (rmnd5a), mRNA. (2163 bp)
KFGGYGQHCERSLEELMEYAGGLRREILQAAEQDGELSGTLSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF" misc_feature 440..1435 /gene="rmnd5a" /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5" /note="Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]; Region: COG5109" /db_xref="CDD:227440"...
AA_position 315
Synonym: ctlh; p44ctlh; rmd5; rmnd5
NM_001008168.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X5, mRNA. (569 bp)
including 43 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 79..414 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X4" /protein_id="XP_031762216.1" /db_xref="GeneID:101733634" /translation="MCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG" misc_feature <202..390 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN //...
AA_position 38
XM_031906356.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X4, mRNA. (628 bp)
including 11 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 138..473 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X3" /protein_id="XP_031762215.1" /db_xref="GeneID:101733634" /translation="MCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG" misc_feature <261..449 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN //...
AA_position 38
XM_031906355.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X3, mRNA. (600 bp)
including 40 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 107..445 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X2" /protein_id="XP_031762214.1" /db_xref="GeneID:101733634" /translation="MQCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG" misc_feature <233..421 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN //...
AA_position 39
XM_031906354.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X2, mRNA. (630 bp)
including 11 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 137..475 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X2" /protein_id="XP_012822292.1" /db_xref="GeneID:101733634" /translation="MQCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG" misc_feature <263..451 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN //...
AA_position 39
XM_012966838.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X1, mRNA. (586 bp)
including 43 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 93..431 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X1" /protein_id="XP_004915979.1" /db_xref="GeneID:101733634" /translation="MQCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG" misc_feature <219..407 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN //...
AA_position 39
XM_004915922.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis uncharacterized protein MGC147490 (MGC147490), mRNA. (2422 bp)
gene="MGC147490" /codon_start=1 /product="uncharacterized protein LOC780335" /protein_id="NP_001072873.1" /db_xref="GeneID:780335" /db_xref="Xenbase:XB-GENE-29099171" /translation="MASSPVPLPLLPSLSCILCHDVPREPVTLSCGHCLCRGCLERAWRGQEAYPTCPKCRPPSVPTPDGVQRGACAEHGEKLHLFSTQDGRLMCPSCRDGTEQHPPHTLVPLQEAVGGYKDELISALAPLEARLKELQQMQCAQEQMIAQHRGNLLSTKHHVNMEFEKLHQYLREREERLLRELQQEGDVILAEMEESLNKIKQNCQGILQTISTTQPRLYEQDSISFLTDIKSCMEICYAGYRDGFPTQNVVAPRDFGFGAVKDLIQYTAWKDMKSYISPALPDIIMDPSTAHLNLILSEDLTSVRYSDTKQNLPENPRRFDYCCCVLGTEGFTSGRHYWAVDVCNKTKWNLGVAKESVNRRGGITLSPENGFWILWLRNGHEFKALDVPYRTLTLRSKPQRLGIFLDYEGGVLSFYNADD...
AA_position 117
NM_001079405.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis uncharacterized XB5759442 (XB5759442), mRNA. (2841 bp)
GENE-5759443" /translation="MAAADLRDELSCSICTSIYTDPVSLPCGHNFCRGCIGGVLGTQEGSGAYSCPECRAEYQECPALPRNRALGNIAERFRPTETEPGETGIFCTYCLLSPVPAAKSCLLCEASLCDTHLRGHCQSAEHVLTEPTASFMGRKCSVHNELLKYFCCEDSACICVSCCLAGEHRGHRVELLSEASEKKKEKLRKVLEKLSPEREETERGAQRLQERRREVAEVAAGETERVTALFRGIREELEALEKRLLSDISRQKEELSLTLTELIQQLEIKKDELSRKIHHIEELCNMADPLTVLQEQWESHGAAFCGAEGADTEGREREDTEGGDRKRRKINHIKVPAVGDLDVGRISETLLTGLAGIVTGVEGRIYGQGDTELVLDRNTAGNHVSVSGDGKSASYSHTDQRRPQTPERFQYYPQTLSTRSFPSGRHYWEVEVSESGGWGVGAAYPSIERGGGQSLIGNNNKSWCLYKWNNNYTVTHDRKVTRLPHVPSCRRIRISLDYEAGRLSFYELSEPIRHLHTFTASFTEPLHAAFCVVGGGACVRIIS" misc_feature 25..240 /gene...
AA_position 270
NM_001045601.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis glutamate ionotropic receptor kainate type subunit 5 like (grik5l), mRNA. (3299 bp)
VTLLSVGCTDAGESKGSIHKEKERSKRQALKHLTVTTIMEQPFSMKTESGMEGFCIDLLSELAQSLGFNYTIKEVKDGRYGAKDQDGNWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISILLRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCLFLVGRLSPCEWTELSTEQNNFNFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNIQTFEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKESNYAFLGESVMQDIMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKWWDNTCNMKRSAGWNPVQPHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSCCSAFSEEMGERLGTNKENQGASDSAKS" sig_peptide 151..213 /gene="grik5l" /gene_synonym="grik5; grik5-like.1" /inference="COORDINATES: ab initio prediction:SignalP...
AA_position 309
Synonym: grik5; grik5-like.1
NM_001079097.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis nuclear factor I X (nfix), mRNA. (2915 bp)
gene_synonym="nfi-x2; nfix2" /note="nuclear factor I/X (CCAAT-binding transcription factor)" /codon_start=1 /product="nuclear factor 1 X-type" /protein_id="NP_001121455.1" /db_xref="GeneID:100158549" /db_xref="Xenbase:XB-GENE-992650" /translation="MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVSIKELDLYLAFFVHTPDSGQSDASNQTEVDIKPPPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATSSGPNFSLADLESPSYYNINQVSLGRRSLTSPPSSSSTKRPKSLDDSEMESPVDDVFYPGTGRSPAAGGSQASVWPNDVDTGPGSLKKPGKLDFCSALSSQTSSSRMAFTHHPLPVLAGVRPGS...
AA_position 49
Synonym: nfi-x2; nfix2
NM_001127983.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis glia maturation factor, beta (gmfb), mRNA. (1792 bp)
gene="gmfb" /gene_synonym="gmf-beta; gmfg" /note="glia maturation factor, gamma" /codon_start=1 /product="glia maturation factor beta" /protein_id="NP_001017002.1" /db_xref="GeneID:549756" /db_xref="Xenbase:XB-GENE-6077246" /translation="MSESLVVCDVDAELVEKLKKFRFRKETNNAAIIMKIDKDRRLVVLEEEHEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLTEKLGFFH" misc_feature 52..417 /gene="gmfb" /gene_synonym="gmf-beta; gmfg" /note="ADF-homology domain of glia maturation factor beta and related proteins; Region: ADF_GMF-beta_like; cd11283" /db_xref="CDD:200439" ORIGIN //...
AA_position 58
Synonym: gmf-beta; gmfg
NM_001017002.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis bolA family member 1 (bola1), mRNA. (802 bp)
XB-GENE-991613" CDS 122..565 /gene="bola1" /codon_start=1 /product="bolA-like protein 1" /protein_id="XP_012825074.2" /db_xref="GeneID:100170577" /db_xref="Xenbase:XB-GENE-991613" /translation="MLMLPLSLLRTKCRIPWTLVTLPYSRSQLYMERPVENAIRSKLTETLKPSHLEVLNESYMHAVPKGSETHFKVVVVSESFLGKSLIQRHRLVNELLKDELAGPVHALSIQAKTPQQWEENPAISKSPACMGGSKHDPEMGRKLGTQV" misc_feature 221..478 /gene="bola1" /note="DNA-binding global transcriptional regulator BolA, affects cell shape, cell division and biofilm formation [Transcription, Signal transduction mechanisms]; Region: BolA; COG0271" /db_xref="CDD:440041" ORIGIN //...
AA_position 97
XM_012969620.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X12, mRNA. (7179 bp)
XB-GENE-944529" CDS 258..704 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_031751100.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 483..641 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 88
XM_031895240.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis family with sequence similarity 162 member A (fam162a), mRNA. (1173 bp)
codon_start=1 /product="protein FAM162A" /protein_id="XP_031752305.1" /db_xref="GeneID:100490517" /db_xref="Xenbase:XB-GENE-997367" /translation="MWGAALRRSGLRSLVERVTVLRGGSVPTHNPLPTRTLGIPRWLCSKPQEVKPKEPGVTFKVPGHRPTDFEKKILVWGGRFKKQEDIPELVTYDMVEMAKSKVRVKVSYLMILMTILGCIAMVVSGKQAAARHESLASFNLEKKARLKDELQKEEIAK" misc_feature 369..677 /gene="fam162a" /note="Protein of unknown function (DUF1075); Region: DUF1075; pfam06388" /db_xref="CDD:461893" ORIGIN //...
AA_position 147
XM_031896445.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X11, mRNA. (6816 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751099.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895239.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X10, mRNA. (6984 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751098.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895238.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X9, mRNA. (6914 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751097.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895237.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X8, mRNA. (7038 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751096.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895236.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X7, mRNA. (7178 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751095.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895235.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X6, mRNA. (7194 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751094.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895234.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X5, mRNA. (7192 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751093.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895233.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X4, mRNA. (6970 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751092.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895232.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X3, mRNA. (6998 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751091.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895231.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X2, mRNA. (7248 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751090.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895230.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ring finger protein 24 (rnf24), transcript variant X1, mRNA. (7290 bp)
CDS 339..815 /gene="rnf24" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_031751089.1" /db_xref="GeneID:100485988" /db_xref="Xenbase:XB-GENE-944529" /translation="MFFYRLSNPPMSPDFQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQARKELYAYKQVILKEKVKELNLYEICAVCLEEFKPKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLHSNQEHGPPQGPLPGAENIV" misc_feature 594..752 /gene="rnf24" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" ORIGIN //...
AA_position 98
XM_031895229.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis trafficking protein particle complex 6B (trappc6b), mRNA. (1611 bp)
Xenbase:XB-GENE-1000721" CDS 139..633 /gene="trappc6b" /codon_start=1 /product="trafficking protein particle complex subunit 6B" /protein_id="XP_002933768.1" /db_xref="GeneID:779535" /db_xref="Xenbase:XB-GENE-1000721" /translation="MNKQDMADEALFLLLHNEVISCVYKAGGDQGDAENGKCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKFVCKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLITQMSAGKQYLEHAPKYLAFSCGLIRGGLSNLGIKSIVTAEVSVMPACKFQVMIQKL" misc_feature 160..624 /gene="trappc6b" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 65
XM_002933722.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis B-cell translocation gene 1, anti-proliferative (btg1), mRNA. (924 bp)
xbtg1" /codon_start=1 /product="protein BTG1" /protein_id="NP_988926.1" /db_xref="GeneID:394522" /db_xref="Xenbase:XB-GENE-1002920" /translation="MHTHYPWANMKPEIMAAVSFISKFLRTKGLMNDLDLQTFNQSLQELLADHYKHHWFPEKPSRGSAYRCIRINHKMDPLIGEAADRIGLNSQQMFKLLPSELTLWVDPYEVSYRIGEDGSICVLYESVPGGGISPSSSGSLVESRISCKDELLLGRTSPSKTYNMMTVSG" misc_feature 209..553 /gene="btg1" /gene_synonym="xbtg1" /note="BTG family; Region: BTG; pfam07742" /db_xref="CDD:462251" ORIGIN // REFERENCE 1 (bases 1 to 924) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for...
AA_position 148
Synonym: xbtg1
NM_203595.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis protein disulfide isomerase family A member 2 (pdia2), mRNA. (1822 bp)
db_xref="Xenbase:XB-GENE-5770794" /translation="MRWLTALQLCLLCTFYTVALGQNATSEEPTKNSSEEETSDELLEEDNVLVLNKKNFDKALETYKYLLVEFYAPWCGHCQELAPKYAKAAEILKDKSEEVRLAKVDATVESELSMEFNVNGYPTLKFFKGGNRTGHIDYGGKRDQDGLVKWMLRRLGPAAIVLDKVESAEKFTSSQESPVIGFFKNPEDADIKIFYEAAELNEDFTFALAHDAKLFEKFGVTEDTVIFFKNSEEKPEFKVDEDLGLDKDELSKFLKINNIDLVTEYSAETSDKIFAAQIPNHLLLFINKTEDSQLALLEHFRKAATHFKGKILFVFIDSDGGFSSVLEYFGLKSSDVPTLRFINLESVKKYAFDAPEITEDTIQTFCRTVLEGNVKQNLMSEEIPADWDKNPVKVLVGKNFEEVAYDESKSVFVEFYAPWCSHCKELEPVWEELGEKYKDHESVIIAKMDATANEIDGLRVRGFPNLRFFPAGPGRKMIEYTKERTVELFSAFIDSGGVLPEEQVEKDAEAEESKEVAEEDKGKDEL" sig_peptide 43..105 /...
AA_position 247
Synonym: pdi; pdip; XPDIp
NM_001011281.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis myosin light chain 7 (myl7), transcript variant X1, mRNA. (670 bp)
product="myosin regulatory light chain 2, atrial isoform isoform X1" /protein_id="XP_012813980.1" /db_xref="GeneID:100135145" /db_xref="Xenbase:XB-GENE-964041" /translation="MASRKAAGKAAAKRAQRGSSNVFSMFEQSQIQEFKEAFSCIDQNRDGIITKSDLKETYMQLGKMNVNEDELDEMLKEGKGPINFTVFLSLFGEKLNGTDPEDSILAAFKILDPNATGNINKDELKQLLMTQADKFTAEEVDQMFAVTPIDVAGNIDYKSLCYIITHGDEKEDS" misc_feature 174..596 /gene="myl7" /gene_synonym="mlc2; myl2a; mylc2a" /note="calmodulin; Provisional; Region: PTZ00184" /db_xref="CDD:185504" ORIGIN //...
AA_position 121
Synonym: mlc2; myl2a; mylc2a
XM_012958526.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis dynein, axonemal, intermediate chain 1 (dnai1), mRNA. (2549 bp)
PAAGDEGADGEDAPKLKERKLTNQFNFSERASQSLNNPLRERACQTEPPPREVFSASANQWEIYDAYVEELKKQQKLKEKPKAPASKKEEETPSRRRMGATESQSDDISKLAKSCKIMERMVNQNSFDDVTQDFKYFEDPADEFRGQEGTLMPLWKFQQEQAKGLAVTALCWNPNYKDLFAVAHGSYDFMKQNRGLVLFYSLKNPSFPEYLFSADSGVMCLDLHRDHPYLVAAGFYDGNVAIYNLKADTPQPSFISSAKSGKHTDPVWQVKWQRDDMDNNPNFFSVSSDGRVVSWTLVKDELVHSDVIKLSFSGTTASGPEGLRLHIHGSGTAFDFHWQTEYLYLVGTEEGNIHKCSKAYSSKFLDTYEAHSMAVDTVRWNPFHPKVFISCSSDWTVKIWQHDVKSPMFVFDLSAPVADVAWAPYSSTVFAAVTVDGKVHVFDLSVNKYEALCQQPVVAKKKTKLTHVEFNPVYPILIVGDDRGYVTSLKLSPNLRKMPKEKKGQEAQKGPEVEVAKLDKLLALVREPDIQQGETESPTHRAEY" misc_feature 1190..1330 /gene="dnai1" /gene_synonym="...
AA_position 456
Synonym: cild1; dic; ics; ics1; pcd
NM_001126518.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis proteasome 26S subunit, non-ATPase 8 (psmd8), mRNA. (1464 bp)
hip6; hypf; nin1p; psmd8-a; psmd8-b; rpn12" /note="proteasome (prosome, macropain) 26S subunit, non-ATPase, 8" /codon_start=1 /product="26S proteasome non-ATPase regulatory subunit 8" /protein_id="NP_001005073.1" /db_xref="GeneID:448645" /db_xref="Xenbase:XB-GENE-961854" /translation="MAQLKCYYFDYKDELPESAYKHQLLGLNLLFLLSQNRVADFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIADCIEKAYGKILFNEATRILFFNTPKKMTEYAKKRGWVLGPNNNFSFSSQQQNPEEVTIPSTELAKQVIEYARQLEMIV" misc_feature 379..726 /gene="psmd8" /gene_synonym="hip6; hypf; nin1p; psmd8-a; psmd8-b; rpn12" /note="CSN8/PSMD8/EIF3K family;...
AA_position 12
Synonym: hip6; hypf; nin1p; psmd8-a; psmd8-b; rpn12
NM_001005073.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
Xenopus tropicalis 2-phosphoxylose phosphatase 1 (pxylp1), mRNA. (3780 bp)
TPGAKERSMEGHAPPNLKLLSVQVIIRHGDRYPLYTIPKTKRPDIDCVLEPGRKPSHPHLTDFISHMSKGVDTQMDGTLGSLPRLPNHILCEMGELTQTGVVQHLRNGQLLKEIYLKKHRLLTSAWTAKHLYFESTGKSRTLQSGLALLYSLLPNFDWKKINVKHQWSTIFCSNHCDCPMRNHYLEEEQRRQYNFRVKNSLLEKTYINMAKIVGIPTRQLRASNPIDSLLCNFCHNATFPCTKNGCIDLEHFKVIKTHQLEDEKERYEKQLYFKYALMATHPLLNQTANRMLRIAEGKKDELFALYSAHDVTLSPILSALGLREARFPRFAARLVFELWHDPEKANNHYVRVLYNGEDVTFQTSFCRDQLRSSKRPLCPLKKFSTFVQKDMFSSLNSTSYYDACHQRLF" misc_feature 109..171 /gene="pxylp1" /gene_synonym="acpl2" /note="propagated from UniProtKB/Swiss-Prot (Q0IHQ9.1); transmembrane region" misc_feature 418..1431 /gene="pxylp1" /gene_synonym...
AA_position 391
Synonym: acpl2
NM_001079153.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase
PREDICTED: Xenopus tropicalis ribosomal protein L9 (rpl9), transcript variant X2, mRNA. (682 bp)
product="60S ribosomal protein L9 isoform X2" /protein_id="XP_004910977.1" /db_xref="GeneID:100379906" /db_xref="Xenbase:XB-GENE-964745" /translation="MKTILSNQIVDIPENVDISLKGRTVTVKGPRGVLRKNFNHINVELCLLGKKKRRLRVDKWWGNRKELATVRTICSHVQNMVKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRSGVACALSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQVEE" misc_feature 47..619 /gene="rpl9" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" ORIGIN //...
AA_position 141
XM_004910920.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/xt/aa%3aKDEL
lang : en | div : | spe : xt | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.211 | 0.211 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.402 | 0.191 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.408 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]