2025-04-15 16:11:51, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_031906355 628 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis beta-microseminoprotein (LOC101733634), transcript variant X4, mRNA. ACCESSION XM_031906355 VERSION XM_031906355.1 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..628 /organism="Xenopus tropicalis" /mol_type="mRNA" /strain="Nigerian" /db_xref="taxon:8364" /chromosome="7" /sex="female" /tissue_type="liver and blood" /dev_stage="adult" /note="F17 inbred" gene 1..628 /gene="LOC101733634" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:101733634" CDS 138..473 /gene="LOC101733634" /codon_start=1 /product="beta-microseminoprotein isoform X3" /protein_id="XP_031762215.1" /db_xref="GeneID:101733634" /translation="
MCILASVVALGILVATCNAACFNQPPELKENLEGCLYKDELHELGSEFRTKDCYDCTCSMDGSMRCCQAYGTPVGYDKKKCKAIFNKKTCTYRVVEKKDRSKECEGHAMVG"
misc_feature <261..449 /gene="LOC101733634" /note="Beta-microseminoprotein (PSP-94); Region: PSP94; pfam05825" /db_xref="CDD:283482" ORIGIN
agcagggctcacagtgctgtatctgtaacaactggaaacataatggaaaactgtgttgctcaattcttatctgatttgctataagtagggggagagcagggctcactgtgtctgtatctgcaacaactagaagaataatgtgcattttggcttctgtggttgcccttggcattttggtggcaacatgtaatgccgcctgcttcaatcagccgcctgaactgaaggaaaacctggaaggttgcctttataaagatgagctgcatgaattggggagtgaatttagaactaaagattgctatgactgtacctgttccatggacggctcaatgagatgttgccaagcctatggtaccccagtgggttatgataagaaaaagtgtaaagctatttttaataagaaaacctgcacttaccgtgttgtggaaaagaaagatcgctcaaaggaatgtgagggtcatgctatggttggataaagtggccgtctccttggggcagagccttcgtgcttacaacatttatatccacattgttttttgcatgaacttaaatcagatacttaaatacagatatattacatgaataaagtgcatatgaataaccaagaaagtaaagtcattaaaacagcaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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