LOCUS       XM_012957367            6594 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component
            (ago4), transcript variant X3, mRNA.
ACCESSION   XM_012957367
VERSION     XM_012957367.3
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030678.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_012957367.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6594
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..6594
                     /gene="ago4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 32 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100495218"
                     /db_xref="Xenbase:XB-GENE-1006882"
     CDS             74..2734
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X3"
                     /protein_id="XP_012812821.1"
                     /db_xref="GeneID:100495218"
                     /db_xref="Xenbase:XB-GENE-1006882"
                     /translation="

MGRKTLCKSETVCRDVTINGSAECLQNVGPPPTNLFQPPRRPGLGTLGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMPIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVTIQWVSVVSLQLLLEALAGHLSEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDVQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRVSNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETTQELLYSQEVIQDLSNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELMAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"

     misc_feature    218..607
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    638..790
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    791..1153
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(947..949,992..994,1034..1036,1046..1048,1100..1102,
                     1121..1123,1127..1129)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1292..2605
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1709..1711,1721..1723,1757..1768,1775..1777,
                     1799..1801,1808..1810,1820..1822,1832..1834)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1913..1915,1919..1921,2159..2161,2573..2575)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

caatataagcaggtgtggtgaagttgctaaagtttgctctttttaagtgatttatttgaggcagaaggggagaatgggcagaaaaactttgtgcaaaagtgaaactgtctgccgagatgttactataaatggaagtgctgagtgcctgcaaaatgttggccctccaccgacgaacctcttccagcctccgcggcgtcctggactgggaacgctgggaaagccaattcggctactggccaatcattttcaggttcagatcccgaagatagatgtctaccattatgatgtggacatcaaaccagagaaaaggccaaggagagtcaacagggaggtggtggatacaatggtgcgtcatttcaagatgccgatttttggagatcgccagccaggttatgatggcaaaaggaacatgtacactgctcaccctctaccaattggcagggacagagttgatttggaagtgacccttcctggtgaaggtaaagaccagacattcaaagtcactattcagtgggtctctgtggtgagccttcagcttcttttagaggctttagctggacatctaagtgaagtaccggatgattctgttcaggctcttgatgtaatcactcgccatctaccatccatgaggtatacaccagttggtcggtctttcttctctcctcctgaaggttattatcacccactcggtggtgggcgagaagtatggtttggctttcaccagtctgttcgtccagccatgtggaacatgatgctcaatatagatgtttctgcgactgccttttaccgtgctcagccggtcatagaatttatgtgtgaagtcctagacgtgcagaacatcaatgaacaaacaaagcctttgactgattcacagcgtgtcaagttcaccaaagaaataagaggtctgaaagttgaagtgacgcactgtggacaaatgaaaagaaagtacagggtgtgcaatgttactagaagaccagcaagccaccagacgtttcctttgcagttggagaatggtcaagccatggagtgtaccgttgctcagtattttaagcagaaatatagcttacagttaaaatatccacatctcccttgtctgcaagtgggacaggagcagaaacacacatacttgccacttgaggtttgcaacattgtagctggacagcgatgtattaagaaactgacagacaatcagacttccaccatgatcaaagctacagctcgatctgctccagacagacaggaggagatcagcaggctggtgaagagtaacagtatggtcggtggaccagatccataccttaaggagtttggtattgttgttcataatgaaatgacagagctaacaggcagagtcttgccagcaccaatgcttcagtatggcggaagagtgagtaataaaactgtagccacaccaaaccagggtgtttgggacatgagaggaaagcagttctacgctggtattgagatcaaagtttgggctgttgcttgttttgcaccacaaaagcagtgcagagaagacttgttaaaaagtttcactgatcagttgagaaagatctccaaagatgcagggatgcccattcaaggtcagccttgcttctgtaaatatgcccaaggtgcggacagtgtggagccaatgttcaaacatctgaagttgacatatgttggtcttcaacttattgtggtgattttgcctggcaagaccccagtttatgcggaggtgaaacgagtaggggacacactacttggtatggccactcagtgtgttcaggtgaaaaatgtagtcaagacttctcctcagacactatcaaacctctgcctgaaaatcaatgccaagctggggggaattaacaacgtgttggttcctcaccaaagaccttcagtgtttcaacagcctgttatatttctgggagcagatgtaacacacccccctgctggggatggcaagaaaccttccattgcagctgtagtgggcagcatggatgggcatcccagccgctactgtgccactgtgcgtgttcagacctcgcgccaagagacaacccaagagctgctgtacagccaggaagttattcaagaccttagcaacatggttcgggaactgcttattcagttctacaagtcaactcggttcaaacccactagaattatctattatagaggaggtgtttctgaaggtcaaatgaaacaggtggcatggcctgagcttatggctattcgaaaggcctgcatcagcttggaagaagattacaggcctggaataacatacattgttgtacaaaaaaggcatcatacaaggcttttttgcgctgacaaaacagaaagggttggaaagagtggcaatgtgccagcaggaactactgttgacagcacaataacacatccatcagagtttgatttctatctctgtagtcatgctgggattcagggaacaagtcgtccatctcattaccaggttctctgggatgataactgcttcactgctgatgaactccaactgcttacctaccagctgtgtcacacatatgtgcgttgcacacgatctgtttcgatccctgcccctgcctactatgctcgactcgttgcatttagagcaaggtatcatcttgtggataaggatcacgacagtgctgaaggaagccatgtatctggtcagagcaatggtcgagatcctcaggctctggccaaagctgttcagattcaccacgacacacagcacacaatgtactttgcctgacagcacagtgagagctggcacaaactctcctcatccttcttttccaatccctgaaatctgttaagcagacttccctgtaatgttcagggccagttctgtctcttggcttcccaccagcacattttggactttttgcactgaatctctttatgatggcatttgaatggaggaaagatgcaaacatttttatttagttatgtaaaaaaacttatggattgtcttctgatgcattggactgaatatttacctcaagctcaaaagatatctgaacattttactccaagcaactcttgttgtgttaattatttttaatttgcaagccagcatttcatcatccttggttgtaacaaaaatgtacatgcttttttgtctcaacatgctgctttgcgactgtacttaaacggaaaagtgtaactgagtggggccatagacttgctaaatgaggtttagtccttactgtaaaataccttcttaatgtttttacaggtaatgccgtctgtcaggtttcttaaccattgcaaacttgtactttttaatgagtgcaggctgcaaatctattgcactatattgcatattaattaaggtaagtttttatttctgtataaaatgaatgtgtaatattaagatttaatataagggccatgtggcgagcactgccatataatttttcacatgcagattgccattactcttccttccccagacaccttttgctgcccaaaacatgttagtattttgccagcacacacagatgcccgtgttattgctgctgcagtttgataaagtttttactctcgaagggatggggtgtggggtaccattttatggcaataacacatttttagtatcatttactatcatttcggcatccacatggtttctgggtgttgtatgatgtagacgttgtctcctttcattaccagtgaatttgtggggaatctgttttacaaaattaccttctcactcttaaggtttttctctgctggttttttttgagcatgtttttttttctgtctatgtgatgtagattgttacttccagtatagcctatgacctctattgttggcagagaatccttcattgccagcagggcaggccctgcatttacaaagaattaaagctccttgactgttgggagagatttaggcagctttgggcccgctgagactacacgatttataccagcattttctattcgtgttggttctctggacccagactaacaaagtgcatgtttgtataatctgcatgtacaacattttcttattatgcctttattcagtttattatttttatgaatgaaaaccaacccatttctgtatacacatgctcttacctgtcctccttgatccctccactctaaaaggttcttgagataaacctttgcagtgctcaactacctgcaggttttgtgatgtggcaactccattaactttaacaagccctgtcttttgtttctctggtatacctcagttgcatttactgctttttttcctgctctaattatccatgttcttacagcatgacaacaggtttgaccattgattttctttttcttctctccatatctacacagaatatacctcactgggacagtagaagttgtgaatgggagggttattgtgctgctttgggctttattgctgcttggtaacccactttagtgccaggaggacctcctgaaggtgctaaggttgtaatcttttgtatgtagtgtgtttgcagttgcagcttggtgagaatctccatatgaccttgatagctttgctgtgtttactggtgattatttcttcagcagttccatttccccagattataactggtgacacatagggctgtttttatgggtcatgccatttgttggcccactgtttattatatgtatattgtgtaactagaccaaaacattgattggctcacatcagaagagcagtcccatgctatctctgatttgctgcatacatagccagccaggatttctgttttcagtgactaactctctaatcatttcaggtatgaggtatgttctaagtactcattcagaggtatttttttaaaataattgcccaatttggttaaaattataattgccgggcctgatctagcttaggagtaagtttattaccaaaggcaagtttcttggctatcttaggagatatcaggcagctatgagctacagtcccaagcaattgaggcttcttggaaaggtttagtttagataccctgttaggcttaaaacttagctcaattgggtttaactagcaagtttgagtatttcatgtgactgacagacaatgacatcatctaatgtaaagtacagggcaaatctagtactgaaacatccaaaatgaacaataatatgaatttgtggtcatttctgtattaaaactataaaatgttaatgccaatgaaatttagaagtccactgtaggaaatgttatgtagtgaaaaaatgcagacctacgtagcaccatttatgcaatatgtgaaaaaaacagaaggctattgcttttcactcccatagcattaagagttttaagcccctttgggttgcgatcatcaacagtgttttctattacggcttacacaataagcaacaagataactgtgccatgagcttcagtatgcagccgactttattgccgtgtcgagctttggccactcgtgactattaaagggtcagctacacacttgtatatagatataaaactgagccaggatacctacagcagtggagatctgtacagttttgaaagtatgattatgtctttgttaggaccgcaatatcagatgaggttttttttgtttttttttcattttgtttgatttctggttaaggataaagggacatgggtgggtgggaaggtagcattaagtagaagtggggtatgtgttttgtaaacttttgaaacactgcacaatttgtgttgcagcaatactattgtgaactttttttttttgttttttttttctcttttccctagtaaatagcagggggtgtgcttggatcagtgttttggggaaaattcgtacctgttttaagaggtttgagtagctgttgcatattttcagtttctctcttatgagactttttaaagggaatctgttatgaatgttcaggaatttgtaaaataatttggtgacatttttcaacttttactaaattgtacaccctaatcggtgtttctcaaatatgtattttccgttcttactggcaattaaattttttttttactggttctcaaaagaattctaagtcccaatgagaactctagacttgtccagttacagcctttctatacacagtcaacccattacttgtttgtaagtgtaaaagaaaaatttatgctttaaaattgcccgttattgaaactttgtataccatacggggaaatgaggggtgttggtcattttgcaccaaagtaaagaaattacagattttagatgttaatactgcagtctgaaaatgcatagttgttttttcaagttaactggcatcctaattacaagactatattgaaaaaagcatttcatatttagagtgatggatctgaagatttaaaggctatatccaggtagataccagactgctgactggtaggacagtctgtgtgttcttatgattggcccttcattaagcggtagtaattcagaatctgtgtttaaactttgcttcagataagtgaatcaaggtcaagtgagagttgtaggcctctaaccatgcttgtaagagcacttggtgtattaaacccgcactttggcatagcctatgaatacaacagcctgcctagtatgaaggggtttatttgcagagtattctcaaggtaagtttggtctgtgtagatagttgtagcataaga

//