LOCUS       XM_002940109           10359 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis poliovirus receptor-related 3
            (nectin3), mRNA.
ACCESSION   XM_002940109
VERSION     XM_002940109.5
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030678.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_002940109.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10359
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..10359
                     /gene="nectin3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 ESTs, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 57 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100496233"
                     /db_xref="Xenbase:XB-GENE-963226"
     CDS             772..2346
                     /gene="nectin3"
                     /codon_start=1
                     /product="nectin-3"
                     /protein_id="XP_002940155.1"
                     /db_xref="GeneID:100496233"
                     /db_xref="Xenbase:XB-GENE-963226"
                     /translation="

MARRRGGNPSLSAALALLLLCRLCGSFAGPVHVDPHVTAVWGKNITLKCLIEVNETITQISWERIIGKGAQTIAVHHPIYGTSFDESYQQRTTFKNTSLHDATIVISNIEFSDAGEYICKAVTFPLGNVQSSTTLTVLVEPTVSILKGPEPLLDGANETVAAYCSAATGKPAAEVSWEGSLGRMETNVTSYPNKTVTVMSQYRLVPSRFARGRNITCVVKHPALENDIRYPFTLDIQYAPEVSITGYDDNWFVGRTDVYLKCNSDANPSPTEIKWTRLDGIWPEGLQSVNNTLLFSLPLTHNVSGIYECKVANALGQKSDQKIITILDPPATTPPPTIPQTHSTTDIVGIETSSKKIHIPASTLATLQDGNFGTIVGSVVGGCLFLILLIVIFGIIYYRRKQTFRGDYFTKSYIPPSDMQKESQIDVLQPEDLDPFPENPKKDINIKANDHIYNEYLQDVENSGWNNVITYDRYQEHFDRPMTNYPDKQMPVVSRYNKNCFNDNEDDLVSHVDGSLISRREWYV"

     misc_feature    856..1185
                     /gene="nectin3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    904..918
                     /gene="nectin3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    946..960
                     /gene="nectin3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1075..1089
                     /gene="nectin3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1117..1134
                     /gene="nectin3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1159..1170
                     /gene="nectin3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1192..1479
                     /gene="nectin3"
                     /note="Second immunoglobulin (Ig) domain of nectin-3 and
                     nectin-4 (poliovirus receptor related protein 4), and
                     similar domains; member of the C1-set of Ig superfamily
                     (IgSF) domains; Region: IgC1_2_Nectin-3-4_like; cd07704"
                     /db_xref="CDD:409501"
     misc_feature    1192..1212
                     /gene="nectin3"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409501"
     misc_feature    1249..1272
                     /gene="nectin3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409501"
     misc_feature    1285..1305
                     /gene="nectin3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409501"
     misc_feature    1309..1317
                     /gene="nectin3"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409501"
     misc_feature    1321..1344
                     /gene="nectin3"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409501"
     misc_feature    1357..1383
                     /gene="nectin3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409501"
     misc_feature    1411..1434
                     /gene="nectin3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409501"
     misc_feature    1450..1470
                     /gene="nectin3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409501"
     misc_feature    1489..1749
                     /gene="nectin3"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:472250"
     misc_feature    1543..1557
                     /gene="nectin3"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    1585..1599
                     /gene="nectin3"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    1645..1659
                     /gene="nectin3"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    1687..1704
                     /gene="nectin3"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    1732..1743
                     /gene="nectin3"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    1810..>1995
                     /gene="nectin3"
                     /note="Ca2+/Na+ antiporter [Inorganic ion transport and
                     metabolism]; Region: ECM27; COG0530"
                     /db_xref="CDD:440296"
ORIGIN      

acatggcaggaatttagcaaggagaaacatttgacatgttggactctattggcaaagcgtatgcctatttgcaaagggacagcttgacactgaactatgtaatgcgatttcacgtcccaggctgtacgactgtctgtttacgccatgcttctaagacgctgaacgtaagaaacaagcagccctgcttccagtcttgctgaactacaagtaaaaatggacagagtagaggatgtgagagttgcaggtcagcaacagctggcgaacccacgacataatcttccgacttccgaatccgtgccagcgcggtgggtatgctgcacaaggcacatgtagggaaggggatcctgggtgcgggataggaatgggcaggcacagctcatcttactggaaagctcgcactttggactctggctgggcactgactgactcagtccgcctccttcttcgtatcaggagtgttaaagacagggaaagcagcgcttagagggggactcagccaacccctgtgtccacttccttcccctgcaaaggaggggggttggggtacagttctacccaccccaatagtcccatactaaagcaagcagcaccagtgcagctcgggtgaccttctgcgatctgtctcgcctagcccctcccagtcggctcgggttctgtggcgcatcccaccccccattcctctctctccatgctcggagcattgtgagacaactgggagtcgcggtgtgtgtgcagtgggctctcgggaaacggcagcccttggactgtgtcatggcgcggaggagaggagggaacccgtccctgagtgctgccctcgccttgctgctgctatgcaggctgtgcggctcatttgcaggacctgttcatgtggacccacatgtaacagcagtttggggaaagaacattacactgaaatgtttaattgaagtaaatgaaacaataactcagatctcatgggagcgaattattggcaaaggtgcacaaaccatagctgtacatcaccctatttatggaacatcgtttgacgagtcatatcaacaaagaacgaccttcaaaaacacttctcttcatgatgcaaccattgttataagtaacattgaattttcggatgctggagagtacatctgcaaagcagtcacattcccacttggaaatgtccagtcatcaactactcttacagtgttagttgaaccaactgtgagcattttaaaggggcctgaacccttactggatggtgctaatgaaacagtagcagcatattgctcagctgctactggaaagcctgctgcagaagtgtcctgggaagggtctcttggaagaatggaaacaaatgttacatcttatccaaacaaaacagtgactgtaatgagccagtaccgcttggttccaagccggtttgcaagaggaagaaatataacctgtgtggtgaagcatcctgctctggaaaatgacattaggtatccatttacgttggatatacagtatgcccctgaagtttcaataactggatatgatgataattggtttgttggtagaacagatgtttatcttaagtgcaattctgatgctaatccgtctcctactgaaataaaatggacaaggttagatggaatttggcctgaaggcttacagtctgtaaataatacactacttttcagcctcccacttactcacaatgtttctgggatatatgagtgcaaagtggccaatgcacttggtcagaaaagtgaccaaaagatcatcacaattctagatcctcctgctactaccccacctcctacaataccacagacccactcaactactgatattgttggcatagaaacatcttcaaaaaaaattcatattccagcctccaccttggctactctgcaggacggaaactttggcacaatcgttggcagcgtagttggcgggtgtctctttctgatactgctgattgtgatttttgggataatctactataggaggaaacaaacattccgtggtgactactttaccaagagctacatccctccatccgatatgcaaaaggagtctcaaatagatgttcttcagcctgaagatctggatccttttcctgagaatcccaaaaaagatattaatattaaagcaaatgatcatatctataatgaatatcttcaggatgtagaaaactctggttggaacaatgttattacctatgatcgataccaggaacactttgacaggccaatgactaactatcctgataaacaaatgcctgttgtatccaggtacaataaaaactgctttaatgacaatgaagatgaccttgtatcacatgtggacggttctctcatctcacggagagagtggtacgtttagtgagagactgctggggaaaaaaacttgatagtgcattcaactacatgataagatgggggtggggtcacgtgacctcttaaaaccacttgttttttttttatacccatttaccttactttcgaagtggatgggatgagtacaaatgtggtctcctgcatctgtttatttgaaatatgtaaatataatcaatacaccgaaaatttgattattaaatcgtagaattcccaagtcggggagaagttaggtatcagaggtaacgctgagtgtataaatctagtccttaagcaacccacattagaaaaggctgctaattatagacagagtattccagttgtgctttctatagctagattgcagtatggctggtcccactctcacaagcactgcaaaccaaataacattgatttctaaaatgcctccatgttcagtagaatttttctttcaaacaatccaaatctgatagcataccagcagcattatcaaaggactggccatgttatctgtcaatatataacaaatttggctttttatattttaaaagttaattgttgttgcatacattgtttttttcctttttattgagcaatacaacttaaagggaaagtgttggcaaaagttcattatttttcaaagcacctttacatattaagtacattcagcatatctttgctgggactcttactttaatataaaaaaataccagtccttacatatttaacaggctcttttctgctggaatgtgccagtttgttaaaatttaccatactatttgtctttacatgggcctctctagcatattatgctttctgtacagacaaaatggagatccaaataacagaaagatccctattgatgctttatggatagatatgagagcttatgtccaaaagacagttttaaaatcagagactcggtgggcacatggggtaaatacaggcattttaccagctgtatttttcttttttttttttcatttttgtagctgtaacacatggcaccaagaaacacaaacttgccctcaataacaatcgcctgaaaactcttcatgtggcatgcttgttttcagtcatggagggcaatttttgtgcaacattgcatgaagaacaaacatatggcaattcaaaaggaataatattttttctatccaatattttacatttttgtttgactatacctttagggattttcagcttgaaaaatgttaattgatgtctgtagctccaaatggggtttgaactgggttaaacatgccattgcaatgcagtataacatttgcacagtgtagggggaaaggcattctttcaatcatacaggctcaattactaatattgcacaggtttgcagcagtgcaataatccatacaggccattggctttgattagtaatctgcaggctgaatggtagaagcacacttctaactgggttctataggttgcctgtaccatccttggtaaggttaataaataaaataaattgacttctgcatttaaatactgcggggtatatagtaaatagacacttaattctcatcacggaaacattgtggaattaaaaaaccctcagttttacatttatgggttggggaggactggagtatttgctgtcaaggttattgtaacctttttctattaaaacattgcaatgaacatttatagtgtctcatacatataataaccttactaatggtgtaacttcaggcttgtagcagtgttatgttacagctcaggcattacatatgtatcctgaggaatcagataccaccagggaagacttttaacacatcctataagactgaataaaaagatgaggcctcaggacaagcagaaacaaaaaatgtagaagctgctataagtcaccattggttttttttgtcttggataaaacttttcccttacagccttctgtcttttatatggttactgaaattctttttagattctaatatacattgttatgtgcaatcaatggcagttcagcagctttagtgttagctccccataaggagtgggtgttgtccatagcctaaatgctatcgcaatatcatacagctctagttagtccatcattgtcatttatattaaaacaaaggctcttgcaactgcagcttggccttaattttcaaaatgcaagagctatttaattggagttggttagcaatgtaaatgattaagggttgtgtgtgtgctgctctgtgtaacataataatgggcaataataataatgggcaggagtaaaggtggccatacacgtaacgatccgctcgcctggcgaggtcgccaagcgagcggatcttctcccgatatccccacctatgggtgggcgatatcgggggaattaaggctaattcggtcgtttggccctggggccaaacaattacaattataacgactgttaagggcacagttggttcggggaccacattctttaacctgcctgattgatatctggccgatttcaggccagatatcggtcgggcaggccagtcgttgctgcccctacacgggccaataagctgtcaaatcggtctaagggaccgatatcagcagctacaatcggcccgtgtatggccacctttaatcaggaaatgcctctcagctgccacccaacattttggactgatcctgtatggttatattggagaattataatggtggcaatgggatggtgtgatcctcgtgtatgttgaggtacaaatgtgaccatattccagccaatcagggcaactcccacccaacctcaccttcagttgtatcaatttatcatggtagtcattgccttaagaatttaataatttgtattgcccatgaaaaccagagtggggtttatggagagcctgatgtatctgtcatgctaagcgggggatggtatgatcctcctgtggcttggaggacaaatgtatatggtactgcagctgactggagcatccactccaagcctaacataactgactgatggtgtttttagataactgtggtaatgttgggcttggagtgtgtttgtataataaatactttggtagtgaattctatcattgatagcaattattttgaattacttaccagtttccacatacagggaaatattttcgctctatgacttcacgatggctcacatcctgaagtctgtcactgcatctatagagagctatgtggtctatggatcacagcaacccagtatcatccacaaccaaaagtggtcagtggttttacatcagatctcagatcttaccatttacttattgagacttttggggattaggccccaactccccacagaacacatttgtacagcccacatttagttcttaacaaagatagaaactaaatttgtcattacttgcaaatgtacttattgtgttccagttgtatccagagcagcacagcaacgttcactccaagtgttctgattactggcattcagattggtacctccattaagtgctttgggaacccttttgaagtcaacccacacagtttaagaggaaaattgaggcaacataataccatgtgtgccattgttcttcgtgtataaaggaatctgttgtactgctgattgcaggggttgcagcactgtctatacgtgggtttaagcaaaaatgatcactcactcacagtatttagttttattttctttaaatcatcatgcatgattaaaggcatagcatattgcctccactagcacccttctacatggttgcatttctatacagaatgtaaagtagaactgccatattccacaacagaaccatttatcagcatccttggtggttgtatgaagtatttggttgacacagtgaaacttaaggcaagtgcaagaattatacaacttcctgttgataaatacgatctatacaaacacgccaatgctgtatttcttcatgaagtatttcagatgtactgatagagtgtgtgttcccattcagcctgtaatattaaaggtccagtagcacataatacacgattgtgtatgatgtactgtcactgtactagtaaaccgtcaatgtgtgttttagcagctctaatatagtttatatcgataagcttctgtgtagtcatgggggtgccactgaagttccagtatggctgtaagactaacatttgtttcaaatacaatggttttagtactttagtcacagtaaacaggcccaaatgtcatccattcctgccaacacattttctacatattattataatatttcagcttggtcttaatggctcattgtatccctgcccaaatctttgcgccaaagggtttcagcatggccgcaggtatcttttagcatcactaccagtctctgggattttcagccacactatttgcattagaactatttatgaattatgaatatgttcatatttttctgatttgtatgaagcaatgtctgtatttataattaccacttgatggtaccaaatttctttgaaaatgccaaagtatgcttgttcattgtaaaaacccatggtactttgtatatgaatgtatgaatagaactggtcctgaagttcttatatttatacagtgctgcctgtagtgtttaggtcatattgacctgtataaaaaaaagtaatttgtgattaaaaagatgaaaataagttgaaagtacaaactttagtgattcttccacaaaggtttttgcgatttcctacatttgtgaggctagaagttcattagtgttgatatgaaatattatgtgcctattttagggaccccattccccatcttgtgtggtcatagaacacaaattatttggctcattatcaaaagcggttaaaccaatacatcaccatttgtaccccatttcttcatccctcatggtgctggcactatgaatagttccaccctactaaacagctccaacatttccctctaacttgtttgcttgggaatgatacaataccaaattctgtttctctgtgctaggccactggccagtatatatactatacttaaaaatcaaccatgatgaccatgaatccataaagcagtttttggcattggcctatattgatcctgacacattaacaaactgcagcaacagatccccgatttaacattgctccatgtgtgcagtttgtttgcgaaccttgggtacctctgcactgagctgcagcgccctctttggcctgttctctggagtctcagtgggtcggacatcctgttgcacacagctattgcactaaaatcggttctggcaaactgtttctctgtgtaatgcctttgagggctgcactgggaccacaagcctccacttgaacagctctgcgttaatacacatggtcttggaatttttttgttggctgttcatttgacccaattcattttgtgtaccttgctcacatatatataaattggccagtgcaccatagcaattggctaaatcagtgtataactcagagggataatgctgtcaatagtcctagcagcatctgcctaggcctgcagtggaagaagggagctttctgggaaaaggtttcaggaatctcatctcaaacttgctcatgtggtggttcattttagccaatagtccttgcctttccccctcccccccccaaaaggcaatatggcacatactttccccttaaccaaaatgatgatacataccttaatgcatacacagacagactttctcagcatgtttctacacaagacgatagatggtaagagctgcaaagaggctttttttgtcttgccaaagggacatgcacagaatcaaaggaatactgtaggagaaaaatgtataacttttgactgaaaacattgtgtaatattgggccagattcagtttgctgaataaacaattttaagctttttatcatgaaactgtatgtatcatgaaaagtgtatgaggaaaatttggagaagtttttctcatgaattagtatttggtccattatattgttccaacaatgcactcatattttccctgtactaacacaggaggatgcatgttgcgttaatcctgtgtttagctcaggtgaaaaccaacatgcatgttcctgtgttaatacagccccattagaaagaatgggatgcatttcttcctgtgctcccaatcgcaggaaaatgccactggaggggagtgcaagaagaatataagtatgagctctaaggcagcatgtgggtgctcatgcccctggatgttgctcatttatcaaatgcttattggagcagcaatgagcacagggtgcagtgggagctctgtacctgtctaaggcaggtcttaacagcagggcttccttgtgttgaaaagtgctgtgctgttgtactgcagcttggttaggtgcaagtaccaagtgggtggtgccttttgcatgtaaacagcagccttgtcttgctttatggcaagtctatgagagtctataagagtatattttcatatcaatgtcacacaagatttagaagcattggtctctttttatctaagacaaacttagcatatactacaccactgagacacagaaagcttagctaaggcaaagtaaatgagtgcattgaaataggccctgagttcaattccagtcagggcactatctgtgtgttctccctgtgtctgcttgggtttccttattttaaaaacctaaattgttctatttagattggtgagaagctgttcaaagggattagtatgcttcaaaatgttcattatagggctgtatgtgttgcattgtggtgtctcccaaagagccatactgtgttgtcttctatgccttacactgtcattggtcagtccaaaacttgctgccttgtctattaccacaagcactactgcattatgggtagaaatagtacaaatcagctgtatgttaatgattgtacagtacatgcaaaagtctgtgtgctattggggtgaactatttggcaagaagcatagcaacagcttagtggtggcctaaatgccgccatggtctgactccatttttagtataccaattattacactagcaacgacattttcctctgtaaataagcgatgacttatggctgtttataggggctttgaatattgcctcccaaatactaaaataactgaatgtaattcatatctgttttaatgctcaagattataaagagaataaagctgcattggagcagcatcttcaccaattttacgaaatggcttttcaatttaagtacatttttctctgcagtcttccaaattttgtatattgcgtatgcgctagacttttccacagtagctctagatttgtaatgaattacacaaattatttctagacgaaagctttttttattgtttcagttacagcaggttgtagccgagtgattatttgtttacacgttgaattgttttatataatgttctgaatttacagaaaattgtacgattggtcctaaattcattttagaaaaaaatgatcatttttcaaactgctaccggtaaggtcggtccttaatttcatccactcagcattgtgtttgattatgaaatgtgtatgatttgctgctaaatgcggcgcttgcatttagagttcgaaccacaattcatgttgaaaatgtcttagatatatctatatattttgaatatattcacgtttacattcagtaacaagtcgcttgctgctttcagggatgtatttacctgtgaattgaaattcaccaaaaaatgaagtctgtcaagagtagtgggttatgaaatccattttttttccgatctctacgtaaatctacttgtttctaatctgcaatgttaaattttgatggcttagatgaagcaactgaaaaatgtgatatatattttttttttatatatgaaaatattttacttgcgcttctggtaagtgttgggatgtaacttttggattctgatttttttttttaatgtactgcaatttgagtttactaatttcaatgatttgctaatataaatattacatttttatgataaaaatatttgttattctcgaactgagcttgcagtgatgttaagatatgtttgttgtaaaacaggaatgattgttactctgagctgagcgaaataaatttttactgaattac

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