LOCUS       XM_002938838            6587 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component
            (ago4), transcript variant X4, mRNA.
ACCESSION   XM_002938838
VERSION     XM_002938838.5
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030678.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_002938838.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6587
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..6587
                     /gene="ago4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 ESTs, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 37 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100495218"
                     /db_xref="Xenbase:XB-GENE-1006882"
     CDS             73..2727
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X4"
                     /protein_id="XP_002938884.2"
                     /db_xref="GeneID:100495218"
                     /db_xref="Xenbase:XB-GENE-1006882"
                     /translation="

MGRKTLCKSETVCRDVTINGSAECLQNVGPPPTNLFQPPRRPGLGTLGKPIRLLANHFQVQIPKIDVYHYDVDIKPEKRPRRVNREVVDTMVRHFKMPIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVTIQWVSVVSLQLLLEALAGHLSEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDVQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETTQELLYSQEVIQDLSNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELMAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"

     misc_feature    217..606
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:465134"
     misc_feature    637..789
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:462567"
     misc_feature    790..1152
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(946..948,991..993,1033..1035,1045..1047,1099..1101,
                     1120..1122,1126..1128)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1291..2598
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1702..1704,1714..1716,1750..1761,1768..1770,
                     1792..1794,1801..1803,1813..1815,1825..1827)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1906..1908,1912..1914,2152..2154,2566..2568)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      

aatataagcaggtgtggtgaagttgctaaagtttgctctttttaagtgatttatttgaggcagaaggggagaatgggcagaaaaactttgtgcaaaagtgaaactgtctgccgagatgttactataaatggaagtgctgagtgcctgcaaaatgttggccctccaccgacgaacctcttccagcctccgcggcgtcctggactgggaacgctgggaaagccaattcggctactggccaatcattttcaggttcagatcccgaagatagatgtctaccattatgatgtggacatcaaaccagagaaaaggccaaggagagtcaacagggaggtggtggatacaatggtgcgtcatttcaagatgccgatttttggagatcgccagccaggttatgatggcaaaaggaacatgtacactgctcaccctctaccaattggcagggacagagttgatttggaagtgacccttcctggtgaaggtaaagaccagacattcaaagtcactattcagtgggtctctgtggtgagccttcagcttcttttagaggctttagctggacatctaagtgaagtaccggatgattctgttcaggctcttgatgtaatcactcgccatctaccatccatgaggtatacaccagttggtcggtctttcttctctcctcctgaaggttattatcacccactcggtggtgggcgagaagtatggtttggctttcaccagtctgttcgtccagccatgtggaacatgatgctcaatatagatgtttctgcgactgccttttaccgtgctcagccggtcatagaatttatgtgtgaagtcctagacgtgcagaacatcaatgaacaaacaaagcctttgactgattcacagcgtgtcaagttcaccaaagaaataagaggtctgaaagttgaagtgacgcactgtggacaaatgaaaagaaagtacagggtgtgcaatgttactagaagaccagcaagccaccagacgtttcctttgcagttggagaatggtcaagccatggagtgtaccgttgctcagtattttaagcagaaatatagcttacagttaaaatatccacatctcccttgtctgcaagtgggacaggagcagaaacacacatacttgccacttgaggtttgcaacattgtagctggacagcgatgtattaagaaactgacagacaatcagacttccaccatgatcaaagctacagctcgatctgctccagacagacaggaggagatcagcaggctggtgaagagtaacagtatggtcggtggaccagatccataccttaaggagtttggtattgttgttcataatgaaatgacagagctaacaggcagagtcttgccagcaccaatgcttcagtatggcggaagaaataaaactgtagccacaccaaaccagggtgtttgggacatgagaggaaagcagttctacgctggtattgagatcaaagtttgggctgttgcttgttttgcaccacaaaagcagtgcagagaagacttgttaaaaagtttcactgatcagttgagaaagatctccaaagatgcagggatgcccattcaaggtcagccttgcttctgtaaatatgcccaaggtgcggacagtgtggagccaatgttcaaacatctgaagttgacatatgttggtcttcaacttattgtggtgattttgcctggcaagaccccagtttatgcggaggtgaaacgagtaggggacacactacttggtatggccactcagtgtgttcaggtgaaaaatgtagtcaagacttctcctcagacactatcaaacctctgcctgaaaatcaatgccaagctggggggaattaacaacgtgttggttcctcaccaaagaccttcagtgtttcaacagcctgttatatttctgggagcagatgtaacacacccccctgctggggatggcaagaaaccttccattgcagctgtagtgggcagcatggatgggcatcccagccgctactgtgccactgtgcgtgttcagacctcgcgccaagagacaacccaagagctgctgtacagccaggaagttattcaagaccttagcaacatggttcgggaactgcttattcagttctacaagtcaactcggttcaaacccactagaattatctattatagaggaggtgtttctgaaggtcaaatgaaacaggtggcatggcctgagcttatggctattcgaaaggcctgcatcagcttggaagaagattacaggcctggaataacatacattgttgtacaaaaaaggcatcatacaaggcttttttgcgctgacaaaacagaaagggttggaaagagtggcaatgtgccagcaggaactactgttgacagcacaataacacatccatcagagtttgatttctatctctgtagtcatgctgggattcagggaacaagtcgtccatctcattaccaggttctctgggatgataactgcttcactgctgatgaactccaactgcttacctaccagctgtgtcacacatatgtgcgttgcacacgatctgtttcgatccctgcccctgcctactatgctcgactcgttgcatttagagcaaggtatcatcttgtggataaggatcacgacagtgctgaaggaagccatgtatctggtcagagcaatggtcgagatcctcaggctctggccaaagctgttcagattcaccacgacacacagcacacaatgtactttgcctgacagcacagtgagagctggcacaaactctcctcatccttcttttccaatccctgaaatctgttaagcagacttccctgtaatgttcagggccagttctgtctcttggcttcccaccagcacattttggactttttgcactgaatctctttatgatggcatttgaatggaggaaagatgcaaacatttttatttagttatgtaaaaaaacttatggattgtcttctgatgcattggactgaatatttacctcaagctcaaaagatatctgaacattttactccaagcaactcttgttgtgttaattatttttaatttgcaagccagcatttcatcatccttggttgtaacaaaaatgtacatgcttttttgtctcaacatgctgctttgcgactgtacttaaacggaaaagtgtaactgagtggggccatagacttgctaaatgaggtttagtccttactgtaaaataccttcttaatgtttttacaggtaatgccgtctgtcaggtttcttaaccattgcaaacttgtactttttaatgagtgcaggctgcaaatctattgcactatattgcatattaattaaggtaagtttttatttctgtataaaatgaatgtgtaatattaagatttaatataagggccatgtggcgagcactgccatataatttttcacatgcagattgccattactcttccttccccagacaccttttgctgcccaaaacatgttagtattttgccagcacacacagatgcccgtgttattgctgctgcagtttgataaagtttttactctcgaagggatggggtgtggggtaccattttatggcaataacacatttttagtatcatttactatcatttcggcatccacatggtttctgggtgttgtatgatgtagacgttgtctcctttcattaccagtgaatttgtggggaatctgttttacaaaattaccttctcactcttaaggtttttctctgctggttttttttgagcatgtttttttttctgtctatgtgatgtagattgttacttccagtatagcctatgacctctattgttggcagagaatccttcattgccagcagggcaggccctgcatttacaaagaattaaagctccttgactgttgggagagatttaggcagctttgggcccgctgagactacacgatttataccagcattttctattcgtgttggttctctggacccagactaacaaagtgcatgtttgtataatctgcatgtacaacattttcttattatgcctttattcagtttattatttttatgaatgaaaaccaacccatttctgtatacacatgctcttacctgtcctccttgatccctccactctaaaaggttcttgagataaacctttgcagtgctcaactacctgcaggttttgtgatgtggcaactccattaactttaacaagccctgtcttttgtttctctggtatacctcagttgcatttactgctttttttcctgctctaattatccatgttcttacagcatgacaacaggtttgaccattgattttctttttcttctctccatatctacacagaatatacctcactgggacagtagaagttgtgaatgggagggttattgtgctgctttgggctttattgctgcttggtaacccactttagtgccaggaggacctcctgaaggtgctaaggttgtaatcttttgtatgtagtgtgtttgcagttgcagcttggtgagaatctccatatgaccttgatagctttgctgtgtttactggtgattatttcttcagcagttccatttccccagattataactggtgacacatagggctgtttttatgggtcatgccatttgttggcccactgtttattatatgtatattgtgtaactagaccaaaacattgattggctcacatcagaagagcagtcccatgctatctctgatttgctgcatacatagccagccaggatttctgttttcagtgactaactctctaatcatttcaggtatgaggtatgttctaagtactcattcagaggtatttttttaaaataattgcccaatttggttaaaattataattgccgggcctgatctagcttaggagtaagtttattaccaaaggcaagtttcttggctatcttaggagatatcaggcagctatgagctacagtcccaagcaattgaggcttcttggaaaggtttagtttagataccctgttaggcttaaaacttagctcaattgggtttaactagcaagtttgagtatttcatgtgactgacagacaatgacatcatctaatgtaaagtacagggcaaatctagtactgaaacatccaaaatgaacaataatatgaatttgtggtcatttctgtattaaaactataaaatgttaatgccaatgaaatttagaagtccactgtaggaaatgttatgtagtgaaaaaatgcagacctacgtagcaccatttatgcaatatgtgaaaaaaacagaaggctattgcttttcactcccatagcattaagagttttaagcccctttgggttgcgatcatcaacagtgttttctattacggcttacacaataagcaacaagataactgtgccatgagcttcagtatgcagccgactttattgccgtgtcgagctttggccactcgtgactattaaagggtcagctacacacttgtatatagatataaaactgagccaggatacctacagcagtggagatctgtacagttttgaaagtatgattatgtctttgttaggaccgcaatatcagatgaggttttttttgtttttttttcattttgtttgatttctggttaaggataaagggacatgggtgggtgggaaggtagcattaagtagaagtggggtatgtgttttgtaaacttttgaaacactgcacaatttgtgttgcagcaatactattgtgaactttttttttttgttttttttttctcttttccctagtaaatagcagggggtgtgcttggatcagtgttttggggaaaattcgtacctgttttaagaggtttgagtagctgttgcatattttcagtttctctcttatgagactttttaaagggaatctgttatgaatgttcaggaatttgtaaaataatttggtgacatttttcaacttttactaaattgtacaccctaatcggtgtttctcaaatatgtattttccgttcttactggcaattaaattttttttttactggttctcaaaagaattctaagtcccaatgagaactctagacttgtccagttacagcctttctatacacagtcaacccattacttgtttgtaagtgtaaaagaaaaatttatgctttaaaattgcccgttattgaaactttgtataccatacggggaaatgaggggtgttggtcattttgcaccaaagtaaagaaattacagattttagatgttaatactgcagtctgaaaatgcatagttgttttttcaagttaactggcatcctaattacaagactatattgaaaaaagcatttcatatttagagtgatggatctgaagatttaaaggctatatccaggtagataccagactgctgactggtaggacagtctgtgtgttcttatgattggcccttcattaagcggtagtaattcagaatctgtgtttaaactttgcttcagataagtgaatcaaggtcaagtgagagttgtaggcctctaaccatgcttgtaagagcacttggtgtattaaacccgcactttggcatagcctatgaatacaacagcctgcctagtatgaaggggtttatttgcagagtattctcaaggtaagtttggtctgtgtagatagttgtagcataaga

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