LOCUS       NM_203542                902 bp    mRNA    linear   VRT 02-OCT-2024
DEFINITION  Xenopus tropicalis claudin 6, gene 1 (cldn6), mRNA.
ACCESSION   NM_203542
VERSION     NM_203542.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC059750.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC059750.1, CT025229.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028305, SAMD00028321
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="9"
                     /map="9"
     gene            1..902
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /note="claudin 6, gene 1"
                     /db_xref="GeneID:394468"
                     /db_xref="Xenbase:XB-GENE-959181"
     exon            1..22
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /inference="alignment:Splign:2.1.0"
     exon            23..877
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    35..37
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /note="upstream in-frame stop codon"
     CDS             56..700
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /codon_start=1
                     /product="claudin-6"
                     /protein_id="NP_988873.1"
                     /db_xref="GeneID:394468"
                     /db_xref="Xenbase:XB-GENE-959181"
                     /translation="

MASTGLQILGMALALIGWVGSIITCALPMWRVTAFIGNNIVVAQIIWEGLWMNCIVQSTGQMQCKVYDSMLALSQDLQAARALTVICILVALLAILIGIVGAKCTNCIEDENTKAKVSMISGIVFVVSGILMLIPVCWSANSIIRDFYNPLVVEAQKRELGAALYIGWAASGLLLMGGALLCCSCPKKDDNHYSARYTAATSNPRSDYPSKNYV"

     misc_feature    65..565
                     /gene="cldn6"
                     /gene_synonym="cldn4l2; cldn6.1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

gttggctgaatccttactgcagatttctccactttgacaacttcactgtacaaagatggcttctactggtctccagatccttggcatggctcttgccctcattggctgggtgggaagtataatcacctgtgccctgcccatgtggagggtgactgccttcattgggaacaacatagtcgtggcccagattatatgggaaggcctgtggatgaattgcattgtgcagagtaccggacagatgcagtgcaaggtctatgactccatgttggctctctcccaggacttgcaggctgcccgtgcccttactgtcatctgtatcctggtagccctgctagccattcttattggtattgtgggagccaagtgcaccaactgcatagaagatgagaacaccaaggccaaggtcagcatgatatccggcattgtatttgtggtgtctggtatcctcatgctcatcccagtctgctggtctgcaaacagcatcatccgtgacttctacaatcccctggtggtggaggctcagaagagagaactgggggctgccttgtacattggatgggctgcctctggtctgctgctcatgggtggagccctcttgtgctgctcttgccccaagaaggatgacaaccattactcagccagatacaccgctgctacctccaacccacgaagcgactaccccagcaagaattatgtctgagaacaagagctacctggctatgcatggactttcttttctaataatgtgtcgggggttctccagcaagagcacttgaactgaaggggggtgtcggcttctggagactgttatgggactcttagcctggttcaggcttttatggaaattaatggtttaataaaacattggttttttttttgtaaaaaaaaaaaaaaaaaaaaaa

//