LOCUS       NM_203516               1534 bp    mRNA    linear   VRT 02-OCT-2024
DEFINITION  Xenopus tropicalis Brachyury-inducible homeobox 1, gene 1 (bix1),
            mRNA.
ACCESSION   NM_203516
VERSION     NM_203516.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   D'Souza,A., Lee,M., Taverner,N., Mason,J., Carruthers,S.,
            Smith,J.C., Amaya,E., Papalopulu,N. and Zorn,A.M.
  TITLE     Molecular components of the endoderm specification pathway in
            Xenopus tropicalis
  JOURNAL   Dev Dyn 226 (1), 118-127 (2003)
   PUBMED   12508233
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY157639.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY157639.1, CX452436.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028321
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="5"
                     /map="5"
     gene            1..1534
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /note="Brachyury-inducible homeobox 1, gene 1"
                     /db_xref="GeneID:394438"
                     /db_xref="Xenbase:XB-GENE-482521"
     exon            1..221
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1270
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /note="paired-type homeobox transcription factor bix gene
                     1; Brachyury-inducible homeobox, gene 1; homeodomain
                     transcription factor Bix"
                     /codon_start=1
                     /product="Brachyury-inducible homeobox 1, gene 1"
                     /protein_id="NP_988847.1"
                     /db_xref="GeneID:394438"
                     /db_xref="Xenbase:XB-GENE-482521"
                     /translation="

MLGYTQGMEHLYSNYFSPTDPLMGFPSALGSLMGMGFPPVQHNPVQPANGKADIKAGDTGANQAAQHKEATNQQKVSPTPTSNRRKRTVYSPSDLAQLEQYFRANMYPDIHQREELAGQMGLPESRIQVWFQNRRSKAKRQGSRSTKPAAMGDYYNSPPMYNPAPTANGTIPVAQQQRVVPYQQQVQPLATLHYGFHPNASMQGTNQSRMYSSAPAPHLSGKGSHQHPMAIPQQQVQPIMDLQQNYFHLPQDLLSYPESPWAAPSQRLPVHPTASSTYPHSDLPGKPITSHSTKGMSPGKETERDLGGRQSQVSVHSNLMLDFPPNKTITPEMNTIIPQIPGATGWSSQGGTNAYPTWGALPRAGCSPYREGSPASDSGVSDTATESVSDWEENIIRTLF"

     misc_feature    317..487
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    434..>793
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /note="Vesicle coat complex COPII, subunit SEC24/subunit
                     SFB2/subunit SFB3 [Intracellular trafficking and
                     secretion]; Region: COG5028"
                     /db_xref="CDD:227361"
     exon            222..451
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /inference="alignment:Splign:2.1.0"
     exon            452..1520
                     /gene="bix1"
                     /gene_synonym="bix.1; bix1.1; bix3; tBix"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaggagctcacatcactgtgggaaggggcagatttggtacaaacccacgagtggctgtggcattgggatgcttggatatacccaagggatggagcatctctatagcaactacttctctcccactgaccccctaatgggcttcccttctgccctgggctccctcatgggaatggggttccctcctgtacagcacaatccagtacagccggctaatgggaaagcagatattaaggctggggatactggagccaatcaggcagcacagcataaggaagccaccaatcagcagaaggtttcccccacaccgacgtccaatcgcaggaagagaactgtgtacagcccctcagatctggcccaactggagcagtacttcagagctaatatgtacccagacatccaccagcgggaggaactggccgggcagatgggcttgcccgagtctcgcattcaggtttggttccagaacaggaggtcaaaagccaaacgccaaggatccagatctaccaagccggctgctatgggggattactataacagccccccaatgtacaacccggcacctacagccaatggcacaatccccgtagcccaacaacagcgggtggttccctaccagcagcaggtccagccattggccactctacactatggcttccacccaaacgcctccatgcaaggaaccaatcagagcaggatgtattcatcagcaccagctccccatctctcagggaaggggtctcatcagcacccaatggctattccacagcaacaagtccaacccattatggatttacagcagaattacttccacttgccccaggacctcctgtcttaccctgaatccccatgggctgcccccagccagaggctcccagtacatccgacagcatctagtacctacccccacagtgacctgcccggtaagcccattacaagccacagcactaagggtatgagccctggcaaggagactgagagagacctcggtgggagacagagccaagtgtccgtgcattctaacctcatgttggacttcccccctaacaagaccatcacccccgagatgaacaccatcatcccacagatcccaggggctacaggctggagcagccaggggggtaccaatgcctaccctacatggggggcactgcccagggcagggtgtagcccctacagagagggttctcctgcctcagactcaggagtcagtgacacagctacagagtcagtctcagactgggaagagaacattattagaactctcttctgaatactcagagactgtgcagcaaatatggaaccttcagcatcttatagagagatgtggggccgggccccgggtaccactccggggggcatagaactggggggccacagcttgtaatagaactcacacactaaggcacttggacacttctatgggacacagactggaaaagctacatttatatttaatcgctacatgactgatgaatgttaatttaattgcactaataaagtttctatagtttttggtaaaaaaaaaaaaaaaaaa

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