LOCUS       NM_001271307            1762 bp    mRNA    linear   VRT 07-APR-2024
DEFINITION  Xenopus tropicalis homeobox C10 (hoxc10), mRNA.
ACCESSION   NM_001271307 XM_002936648
VERSION     NM_001271307.3
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AAMC04000002.1.
            
            On Jan 8, 2020 this sequence version replaced NM_001271307.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX737489.1, EL860055.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00861988, SAMN00861989
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-802               AAMC04000002.1     146110441-146111242 c
            803-1762            AAMC04000002.1     146106985-146107944 c
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..1762
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /note="homeobox C10"
                     /db_xref="GeneID:100487723"
                     /db_xref="Xenbase:XB-GENE-486915"
     exon            1..802
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    7..9
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /note="upstream in-frame stop codon"
     CDS             25..1080
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /codon_start=1
                     /product="homeobox protein Hox-C10"
                     /protein_id="NP_001258236.1"
                     /db_xref="GeneID:100487723"
                     /db_xref="Xenbase:XB-GENE-486915"
                     /translation="

MSCPNNVTPNSFLMDSLAGSCRGETYSTNQGMYMQTGSDFSCGMMRNCGIVPSLSKRDDVNNPGLSLNTYPSYLSQLDSWCEPKNTYRIEQPVARQLSSCSFPTNVKEENVCCMYSTDKRAKNATEAALYPNQMPETRSSDHEVPVPSYYRASQGYSMEKTPSCHTTGDFETTFENRTSVSARSEILEQQQAGGKGGFPENTKTDNQSLATNLTTSSATASDIKTEKSLPAPKLPPSEGDKEPSKNTDTSTDNSDAEAKEDIKAENAAGNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT"

     misc_feature    856..1026
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            803..1762
                     /gene="hoxc10"
                     /gene_synonym="XHoxc10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cctctttaaaaaccctgtctgaaaatgtcatgtcccaacaatgtgactcctaactcgtttttgatggactctttggccggtagctgcagaggagagacttattccaccaaccaagggatgtatatgcagactgggagcgatttcagctgtgggatgatgagaaactgtggaattgtcccgtctctttcaaaaagggacgatgtgaataaccctggcttgtctctcaacacctatccatcttacctctctcaactggacagttggtgcgaacccaaaaatacttacaggattgaacaacctgttgcaaggcagctctcatcctgctctttcccaaccaatgtcaaggaggagaatgtttgttgcatgtacagtacggataaaagagcgaaaaatgccaccgaggctgccctctacccaaaccagatgccagagacgcgctcaagtgaccatgaagttcctgtccccagttactaccgagccagtcaaggttactcaatggagaagaccccaagctgtcacaccactggcgactttgagacaacttttgagaataggacgagtgttagcgcaagaagtgagatcttggaacaacaacaagctggggggaagggggggttccccgaaaacaccaagacggacaaccagtccctggccaccaaccttactaccagctctgccaccgccagtgatataaagacagagaaaagtctcccagcccccaaactgccaccctccgaaggggacaaggagccgagcaagaacacagacaccagcaccgacaattctgacgctgaagcaaaagaggatataaaggcagaaaacgctgcaggaaattggctgacagctaagagcggaagaaagaaaaggtgtccttatactaagcaccagacgctggaactggaaaaggagttcttgtttaatatgtacttgacccgtgagcgccgcctagagattagtaagagtatcaacttaacagacagacaagtgaaaatctggtttcagaaccgcaggatgaaattaaagaagatgaacagggagaaccgaattcgggaactgacttccaattttaattttacttgagcttcaaaaaaaaagagtaataagaaagaggaaaaaacgcaaaaaaaaaaaaaaaaaaaagccaacaacaaagaacccaagacagaaatggcaactcccctaccccacccctaaaaagaaattttaaacaaaaaatagtcaattcgaataacattttctaagtcgttattgaaaagcatataaaagcaacttgtaagtataccgttaggtagccctgctgttattttggctattccagtctgtagataaagctacatcgatataaagcatgatcatatattgcatccctgttcctatgtacaaagccagctactgaaatggtatcttaagttatttacttccagcacaaactgagagacatttttattacttttcttttggcaaataaccttatagaggatcccaaatgcgtttaaagtttgctccatcagtgtaacctgtatattgtatcgcaaagcagaatgacaaactgattttaaatgtttgtaaatgagcagctgaagtgaggttatggacattacatatatataaatatatatagaaaaaatacacttaaatatatatcttatgcagctcctctaactgggcgactgcatatttaagtaaggggaaaagaacagtattgctactcctttaaaatacatttcttgtgaccgttatttaaaaaaaaaaaaaaaaaaaa

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