LOCUS       NM_001142117            1936 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis homeobox D8 (hoxd8), mRNA.
ACCESSION   NM_001142117
VERSION     NM_001142117.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168107.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC168107.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMD00028291,
                                    SAMD00028292 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="9"
                     /map="9"
     gene            1..1936
                     /gene="hoxd8"
                     /gene_synonym="hox4; hox4e; hox5.4; hoxd-8"
                     /note="homeobox D8"
                     /db_xref="GeneID:100216142"
                     /db_xref="Xenbase:XB-GENE-920113"
     misc_feature    54..56
                     /gene="hoxd8"
                     /gene_synonym="hox4; hox4e; hox5.4; hoxd-8"
                     /note="upstream in-frame stop codon"
     CDS             153..848
                     /gene="hoxd8"
                     /gene_synonym="hox4; hox4e; hox5.4; hoxd-8"
                     /codon_start=1
                     /product="homeobox protein Hox-D8"
                     /protein_id="NP_001135589.1"
                     /db_xref="GeneID:100216142"
                     /db_xref="Xenbase:XB-GENE-920113"
                     /translation="

MSSYFVSPMYPKYKDAINSAFYECPYGQEVGSGRAPLVYSGSGSGAPQDYYHHPGTLPSPGYQPAPCGITCHGDPAKLYGYDHFQRQHIFTTHQEAEPVQYPDCKSPSASIGADPEHLHQNSPASHMFPWMRAQVAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENSKDKFPVSSQEGKEEADKKGGLHQEQQGREGSN"

     misc_feature    570..740
                     /gene="hoxd8"
                     /gene_synonym="hox4; hox4e; hox5.4; hoxd-8"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

gagggagagaagtagatgggcgcagtgtgcctaataggaaatggtgagggcagtgaggcaagtcattattccatagcgctcagcaggatgagcagcagtgggaccggcgctgcttgtgggctctagtcagtcgctgccgccgctccagccacatgagttcctactttgtcagccccatgtatcccaagtacaaagacgccataaattcagctttctacgagtgtccctatgggcaggaggttggcagcggcagggccccgttggtatatagcggcagcggcagcggcgcccctcaggactactaccaccaccccgggaccctgccgagcccaggctaccagccggccccctgtgggattacgtgccacggcgaccccgctaagctttatggctacgatcatttccagaggcagcacatttttacgacccatcaagaggctgagccggtccaatatcctgactgtaaatcgcccagtgcgagtattggagcggatccagagcacttacatcagaactcgcctgcgtctcacatgttcccctggatgagagcacaagttgccccaggtagaagaagagggagacaaacctacagtcgcttccagaccctggagctggagaaagagttcctctttaacccttacctgaccaggaagaggaggatcgaggtctctcacgcactgggactgacagagagacaggtcaaaatatggtttcaaaacaggaggatgaaatggaaaaaggagaacagcaaagacaagttcccagtctcctcacaagagggcaaggaggaggctgacaagaaaggggggcttcatcaggagcaacagggcagagagggctccaactgaaattactgggactaggattccccattctggtatatgggatgcactgcactctgtctgcacctctcccccattccgcgcaactcaccggggtgtataactacctagggcacaggacccaatgcctgtgtgtatatgtctctgcacaaacgcaaatgcacactagggactatgccaaatgggggggtttctgtcgcggattcggcagatttcaggcaataatactgcaacaattaatttcctattagatgattttatatgtatttgttctaaacacgatttctaatcaaaatgatgtgcactcgagaatcggggggaaagtatttttgtatatttgtatgttttatttacgcaaatgcaaaatgtatattttaaaataagaggcgagaactctaatgatttttctttgtttaaaatgaccaaattaaagtttatgtgccttttatatagatctataacatgtctttcaatgctggaatagcaaatcgttttcaaactatatatatatatatatatatatatatattcatctaattttaactgtcgtattgttagtgaacatgttgcaattgtggtgactgaattgtaaaccacggttcgatagtatctgctaaattacttgttagattatgcaccagaaaattactatttgaaactaaattgaaactattcggtataaatgaagaaaaacggcagtttttaggcataacatttaagttattactatgcactgtgctatttaggtatatatgtatatatatatatataattttatacatacatattacatacagtcggcaattaaacagacagcaatgaacaatttaatagtaggagtgattttacctaatctacctaattattttatttcttgacgttaaattatcgtttcttaattatcttgtttcgttctatgttttgaacaagagaatttgcttttattgtaccgtgtaattattcagagacttgaatctcggttataaggtaaatgtgtgtcattgtatttgaatcagttctaattaacttaagaattaaatgtattttatcggaaaacatcgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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