LOCUS       NM_001130364            2349 bp    mRNA    linear   VRT 06-FEB-2024
DEFINITION  Xenopus tropicalis POU class 5 homeobox 3, gene 3 (pou5f3.3), mRNA.
ACCESSION   NM_001130364
VERSION     NM_001130364.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC167672.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167672.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028305, SAMD00028306
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /map="8"
     gene            1..2349
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="POU class 5 homeobox 3, gene 3"
                     /db_xref="GeneID:100170593"
                     /db_xref="Xenbase:XB-GENE-5903504"
     exon            1..789
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    31..33
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="upstream in-frame stop codon"
     CDS             169..1440
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="POU class 5 homeobox 1, gene 3; POU domain, class
                     5, transcription factor 1.3"
                     /codon_start=1
                     /product="POU class V protein oct-60"
                     /protein_id="NP_001123836.1"
                     /db_xref="GeneID:100170593"
                     /db_xref="Xenbase:XB-GENE-5903504"
                     /translation="

MDQPVLYNQPAFPNFSYSPGLGQEGGNYQYLGNYNAPSYPQPFFHVPPAIKSEYGAQDEVTGGSCHAAPFDWHLYPHFQFSNQVGALSSGDPSPEGRNEEDHGSISEERSSGTPSPNSPMVPSYAQYWHHAPWQGNPTGQALGLPSRAHPDGGEKPQQSDCSPTASLESGASNTEDEEVSSALSSRAERGLCSPSPNNASFGSGNEEDGTTLEEMEEFAKELKQKRVALGYTQGDIGHALGILYGKMFSQTTICRFESLQLTFKNMCKLKPLLEQWLGEAENNDNLQEMIHKAQLEEQNRKRKMRTCFDSVLKGRLEGHFMCNQKPGARELAEIAKELGLEKDVVRVWFCNRRQKEKSKSRMSKAHEFVGGASPVPSPAEHISQDYGLAPLHPNRPPFYPPPFPRNDLFPHMVPGMSMGVLTG"

     misc_feature    <187..>699
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="Sec24-related protein; Provisional; Region:
                     PTZ00395"
                     /db_xref="CDD:185594"
     misc_feature    421..801
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="propagated from UniProtKB/Swiss-Prot (B3DM23.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    796..1011
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="Pou domain - N-terminal to homeobox domain; Region:
                     Pou; pfam00157"
                     /db_xref="CDD:459692"
     misc_feature    1072..1239
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            790..901
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1032
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1197
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..2304
                     /gene="pou5f3.3"
                     /gene_synonym="oct-60; oct60; pou5f1.3; pou60; XLPOU-60;
                     XLPOU60; xoct60"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atcactcagcacccaaggcacttgctggtttagggggtccccgtctccccattatttctgccattgtttttgcttgtggttaatttgccctgtttctgtgtaattgcccctttcagtctgagcacttacccccccccactcactggtccctcaggccgacgcccgaacatggaccaacccgttctgtacaaccaacctgccttccccaacttcagctacagccccggcctggggcaagaggggggcaactaccagtacttggggaactacaatgccccctcctacccccagccgttcttccatgtgcccccggctattaaatccgaatatggagcccaggacgaggtgacgggcgggagctgccatgctgccccctttgactggcacctgtacccccatttccagttctctaaccaggtgggtgccctcagctccggagacccaagcccagagggcaggaatgaggaggatcatggctctatcagcgaagagaggtcttcgggcaccccttcccccaactctcccatggtgccctcctacgcccaatactggcaccatgccccctggcaggggaatcccaccgggcaagctctcggcctgccaagccgggcccatcccgatgggggggaaaagccccaacagtctgattgtagcccaaccgcgtctctggagagtggggcgtccaacaccgaggatgaggaggtctctagcgccctctccagtagggcagaaagggggctctgtagcccctctcccaataatgcctcctttggctctggcaacgaagaggatggaacgaccctggaggagatggaagagtttgccaaggagctgaagcagaagagggtggcgctgggttatacccagggggacattgggcacgccctgggcatattatatggaaagatgttcagccagaccactatctgccgctttgagtccctgcagctgacattcaaaaatatgtgtaaactcaaacccctattggagcaatggctgggagaggcggagaataacgacaacctacaggagatgatccacaaggcccagctggaggagcagaaccgtaagcggaagatgagaacctgcttcgacagtgttctgaagggccggctggagggccactttatgtgcaaccagaagccgggggcccgggaactggccgaaatcgccaaagaactcggcctggagaaagacgtggtgagagtctggttctgcaaccggcggcagaaggagaagagcaaatccagaatgtccaaggcccacgagtttgtgggcggtgccagcccggtgccctcccctgcggaacacatctcccaggactacggcttggcccccctgcaccccaaccggccccccttctacccaccccccttccctcggaacgacctgttcccccacatggtgccggggatgtccatgggggtcctgaccggctgagctgctgattttattctagaaccttctgcccagaacttgccttaatggtgggggggggggggttgcttttattattttatgtgaggaagaggagtcggggcagttgctgaactacaactgggcgagcctctggggttcggacctgggcccccctggctgtcccttgtctggacctgggggggggggttgtttaagtgcccagattggacagttatgatgataaaccagcacttgttaatttgcactgcattatgggaaggggtggggggtatttctactgatgagattggcctaagctttaatgatgcccattgggtttaaatgagatacaaagtagcagcagtcggttccgagtctgtatctgtttatattctctgcactgctgggtccgactccggaaccggccggacagatactggtgtaaggcctccgatggacccagtaccggttaccgacgctgccccattagtgtttgtttgtcattggaatatcggtttgctctaatgtacactggcatggattgcaagctcttggggcactcctgtgtgcagattattggtcatagctacagagggggaggggcctaaaggtgcccacctggtgctgcgggagttaatcacctccctgcattaaagggatggggtgggggtgactaaagcggttattttagcaatccttattgcatggggggcagtaactgtatctcactgtgtaacctctggtctgtgtgtaggtgcccagagcattcccttgggaaactgggattaatgttataacgctgggaattgggttatatcatccccagagccttgtcctataacctgatgtgtgacctgattctaataaaactgccttattcttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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