LOCUS       NM_001129934            2640 bp    mRNA    linear   VRT 05-FEB-2024
DEFINITION  Xenopus tropicalis POU class 5 homeobox 3, gene 2 (pou5f3.2), mRNA.
ACCESSION   NM_001129934
VERSION     NM_001129934.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC167674.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167674.1, CX483583.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMN00861984
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /map="8"
     gene            1..2640
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="POU class 5 homeobox 3, gene 2"
                     /db_xref="GeneID:100170181"
                     /db_xref="Xenbase:XB-GENE-919841"
     exon            1..977
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    261..263
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="upstream in-frame stop codon"
     CDS             282..1661
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="POU class 5 homeobox 1, gene 1; POU domain, class
                     5, transcription factor 1.1"
                     /codon_start=1
                     /product="POU class 5 homeobox 3, gene 2"
                     /protein_id="NP_001123406.1"
                     /db_xref="GeneID:100170181"
                     /db_xref="Xenbase:XB-GENE-919841"
                     /translation="

MYSQQPFPPFAFNAGLIQDPANCHFGGYTGLGHPQPFSFAFSTLKSENGDSGVQGMGDCSAPVMPWNSMASFDHHGQVETNQQGNPIRAPSPTPTLSDSRIKVKEEVAHETDSGEESPEPKYPSPPNPSLYYPNTWTGSPFWQVNPTAGNNSNSTNPMPSQTLVKNGSLPGNTTYPTPANQSPNTPVDCVVSSMESSRCSSANSSNGAINERATTIPNGGMVDGGQSSDNEEEVPSESEMEQFAKDLKHKRVSMGYTQADVGYALGVLYGKMFSQTTICRFESLQLSFKNMCQLKPFLERWLVEAENNDNLQELINREQVIAQTRKRKRRTNIENIVKGTLESYFMKCSKPGAQEMVQIAKELNMDKDVVRVWFCNRRQKGKRQGMPTVDENDGEGYDVGQTMASPPVGHYSLPQVVTSQGYMAAPLGSTPPLYASAFHKNELFPQPLPHAMPMGGHIG"

     misc_feature    513..674
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="propagated from UniProtKB/Swiss-Prot (B3DM25.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    927..995
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="propagated from UniProtKB/Swiss-Prot (B3DM25.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    984..1199
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="Pou domain - N-terminal to homeobox domain; Region:
                     Pou; pfam00157"
                     /db_xref="CDD:459692"
     misc_feature    1260..1430
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            978..1089
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1220
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1385
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..2614
                     /gene="pou5f3.2"
                     /gene_synonym="Oct-25; oct-4; oct25; oct3; oct4; otf3;
                     otf4; pou25; pou5f1.1; xoct-25; xoct25"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgctcaacttcatcttcttcgaagcctcctgagatgcgacttggctagaaagaagcttccgacgtcctcaactccgacttatttgggtggaaaataacttttatggaactcttcacttgatccgacccacctcccatccaggttagagggttccagccccattgcatggagggaagagcgatagacttgttgcattcgttgacttggacttgactctagtgacaaggtcagtgctggtcgttttagggttcagcgagatctgactgcgaccccccgacactatgtacagccaacagcccttccccccctttgccttcaacgccggactcattcaggaccccgctaattgccattttgggggttacaccggcttaggacacccccaacctttctccttcgccttctctacgctgaaatcggaaaatggagactccggggttcaggggatgggcgactgctcggcccccgttatgccctggaactcaatggcatcgttcgaccaccacggccaagtggagaccaaccaacaagggaatccgatcagagcgccgagtccgaccccgactcttagtgactccaggattaaggtgaaagaggaggttgcccacgaaacggacagcggggaagagtccccagaacccaaataccccagcccccccaacccctctctctactaccccaacacatggactggtagccctttctggcaagtcaaccccacagcgggcaacaacagcaactccaccaacccgatgcccagccagactcttgtgaagaacggcagcctccctggcaacactacttaccccaccccagccaaccaaagccccaatacccccgtagactgtgtggtctccagtatggagagcagccggtgcagtagcgccaactcttccaatggggcaattaatgaacgggccactacgatccccaatggggggatggttgatgggggacaatcgagcgacaatgaggaggaagttcccagcgaatcagaaatggagcagttcgccaaagatctgaagcacaagcgggtgtctatgggctacacacaggccgacgtgggctacgcgctgggggtcctatacggcaagatgttcagtcagactacgatctgtcgcttcgagtcgctgcaactcagcttcaagaatatgtgtcaactcaaacccttcctagagcgctggttggtggaggcagagaacaacgacaacttgcaggagttgattaatcgggagcaggtcatcgcccaaacgcggaagcggaaaaggaggacaaacatagagaatatagtgaaggggacgctggaaagttacttcatgaaatgttccaagccgggggctcaggagatggtgcaaatagccaaggagctcaatatggacaaagatgtggtccgggtctggttctgcaaccggcggcagaagggcaagcgccaagggatgcccacggttgacgagaacgacggcgaaggctacgacgtggggcaaacgatggcgtcgccccctgttggacactattcgctgccgcaggtggtgacctcgcagggctacatggcagctccgctcggctccaccccgcccctctacgcctcggccttccacaagaacgagctgttcccccagccgctgccccacgctatgcccatgggcggccatattggttgagggcaacaacctattttacagactgttttacttgtttttaacagtggggtgctctccagcgtccgacccctgccccccaagtttgcataaaccccccttatctgcttttttacccccccctgtcacctttgagttaactttttgtataatgtagagggaaatactttgagacaatttgcaattggtcttttttattttatcatcagttcagcagctctccagtctgctgttagttggttaccagggtccaagttaccttagcaaccagggagtggtgtggatatgaataggggtgctgaatagacaaaaaagtaacaataaaactggagcctcgcaaaccaataggattttggctgccggggtcagcgacccccccccccccccattacaaaacagcagagttgataaacatataaataaagaagaccaattgaaaagatgcttagaataggccattctatatcatactagaagttaacctaaaggtgacccccccccccccaaatctccaacagccactgggtatgggtaaagcccctctttgggggggcccctgcctgcaccccaatacattgaccgacaccctactaatttatttatgggtttaatgcaatttttccatcattggtgcctgagttttttgggggggacactcttgtatagagtccggttccccaaattaatatattggggggtggggaatataaagagttaatgtcagtaaccctttcatgcctgatacaggggggtctgcactcaccgtaacttattcaactacccggcatctcactgtattatagatcccatgtaaataccccctttcccagaattccctctttctcactttttttttttctttttttacaaaaaaaagagattttatgcttccaggatgtaagcgtatatttatgtatattacccacaatgcagtgcaatgaattttcattcctgaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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