LOCUS       NM_001129916            1036 bp    mRNA    linear   VRT 04-JUN-2024
DEFINITION  Xenopus tropicalis VENT homeobox 3, gene 2 (ventx3.2), mRNA.
ACCESSION   NM_001129916
VERSION     NM_001129916.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Goutam,R.S., Kumar,V., Lee,U. and Kim,J.
  TITLE     Cdx1 and Gsc distinctly regulate the transcription of BMP4 target
            gene ventx3.2 by directly binding to the proximal promoter region
            in Xenopus gastrulae
  JOURNAL   Mol Cells 47 (4), 100058 (2024)
   PUBMED   38522664
  REMARK    GeneRIF: Cdx1 and Gsc distinctly regulate the transcription of BMP4
            target gene ventx3.2 by directly binding to the proximal promoter
            region in Xenopus gastrulae.
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC167675.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167675.1, CX435103.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1036
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="VENT homeobox 3, gene 2"
                     /db_xref="GeneID:100170150"
                     /db_xref="Xenbase:XB-GENE-483077"
     exon            1..295
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    22..24
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="upstream in-frame stop codon"
     CDS             31..879
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="ventral homeobox 1; ventral homeobox protein;
                     homeodomain transcription factor vex-1"
                     /codon_start=1
                     /product="homeobox protein vex1"
                     /protein_id="NP_001123388.1"
                     /db_xref="GeneID:100170150"
                     /db_xref="Xenbase:XB-GENE-483077"
                     /translation="

MEKRPYSVAWLSESSQRKPLCTNVDLLGYKSGNPDLPPNREYNVSLPSRVILPTPDYREKENYCGRNVHNGERSPPVRDQLHFHPAPQELTTSRRTSIEVSAESSTDQRVIGMTDTNKKTKSVCDEDAASRARTKFTAEQLEELEKSFKENRYIGSSEKRRLSKVLKLSENQIKTWFQNRRMKFKRQTQDARVEAFFSGLYLPYYGYPDLPTPGYSVQSEFPVLAPQTMAASSIPFGPLHSTVMSPGLHPAIPSANLGSYPCSSMLVRPILNEPTRQRYSPY"

     misc_feature    421..588
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            296..546
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
     exon            547..1021
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtggaaggggaaacacaaacgtgaaggactatggagaagagaccatactcagtggcatggctttcagagagcagtcagaggaaacccctctgcaccaatgtggatctattgggatacaaaagtggaaatccagacttgccgcctaacagggaatacaatgtctcattgccatcgagagttatattgccaactccggactacagagagaaggaaaattattgtggaaggaatgtccacaatggagagagaagcccaccggttagagaccaactgcatttccacccagcaccacaagagcttactacatctcgaaggacttcaatagaggtttccgctgagtcaagcactgaccaacgagtcattggcatgactgacaccaataagaagacaaaatctgtatgtgatgaagatgccgcttccagagcccgcaccaagttcaccgctgagcagctggaggagcttgagaagagcttcaaggagaacagatacattggatccagtgagaaaaggcggctgtccaaggtgctgaaactctctgagaatcagatcaaaacctggtttcagaatagaaggatgaagttcaagcgccaaacacaagatgcaagggttgaagctttcttttcaggactttatttgccttattatggttaccccgaccttccaacacctggatattccgtccagtcggagtttcctgtcctggctcctcagacaatggcagcctcatctattccatttggccctctgcactctactgtaatgtcacctggactccatccagctattccttccgcaaaccttggctcttatccatgctcttccatgcttgtacgcccaatactcaatgagcccacccgacaaagatacagcccatactaactgaaagcattcttggagcaccattgttattattttttatggacacattcaattatttattataagttattacacaatgtaaaaaagagaacattctgttttattactaattttaataataaaaaaaatctgttttaatgcaaaaaaaaaaaaaaaa

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