LOCUS       NM_001127983            2915 bp    mRNA    linear   VRT 02-OCT-2023
DEFINITION  Xenopus tropicalis nuclear factor I X (nfix), mRNA.
ACCESSION   NM_001127983
VERSION     NM_001127983.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166215.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC166215.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMD00028290,
                                    SAMD00028291 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="3"
                     /map="3"
     gene            1..2915
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="nuclear factor I X"
                     /db_xref="GeneID:100158549"
                     /db_xref="Xenbase:XB-GENE-992650"
     exon            1..559
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    545..547
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="upstream in-frame stop codon"
     CDS             557..1858
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="nuclear factor I/X (CCAAT-binding transcription
                     factor)"
                     /codon_start=1
                     /product="nuclear factor 1 X-type"
                     /protein_id="NP_001121455.1"
                     /db_xref="GeneID:100158549"
                     /db_xref="Xenbase:XB-GENE-992650"
                     /translation="

MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVSIKELDLYLAFFVHTPDSGQSDASNQTEVDIKPPPNGHLSFQDCFVTSGVWNVTELVRVSQTPVATSSGPNFSLADLESPSYYNINQVSLGRRSLTSPPSSSSTKRPKSLDDSEMESPVDDVFYPGTGRSPAAGGSQASVWPNDVDTGPGSLKKPGKLDFCSALSSQTSSSRMAFTHHPLPVLAGVRPGSPRASASALHFPSTSIIQQSSPYFTHPTIRYHHHHHTQDSLKEFVQFVCSDTSGQGSGQHSQRLPPPGPTGLSQLDHETPTF"

     misc_feature    560..670
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="Nuclear factor I protein pre-N-terminus; Region:
                     NfI_DNAbd_pre-N; pfam10524"
                     /db_xref="CDD:463134"
     misc_feature    734..1048
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="MH1 domain; Region: MH1; pfam03165"
                     /db_xref="CDD:460833"
     misc_feature    1166..1825
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /note="CTF/NF-I family transcription modulation region;
                     Region: CTF_NFI; pfam00859"
                     /db_xref="CDD:459967"
     exon            560..1091
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1151
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1226
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1227..1347
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1484
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1607
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1786
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1787..1878
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2912
                     /gene="nfix"
                     /gene_synonym="nfi-x2; nfix2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcaggggagagagggaacgagagagagagagtttaagcggacagaaaaaaaaaacagctttcccttctgctccgaaccttctgaaaaaaaaaaccccatcttcctcttattccttttcgtttacctgttttcctttctctttttttttggttgaaaatattgtctgccaaattcccaaggatacgacgcgcccccccccccctattttctcgccatgccatttgtatccaagatgatattttttcctttttttcctgctgcggtcttgcgtccatgagttgttcttgatttgaggccactttatctttccctaactttgtgtgtgttttggggtgttgttttgatccccgtgtaaatatatacattttgggaagcgtttattggctgtcccacgtaaactcacccttttcacccctacatatgctcaattgcttgtcttatccccccctgacagtctctcggtcatctatcaatcgctttctctctccataattctgctcaacttggaatttaggtggttttgagtttctccggcagttcgctatgacaccaagagatggatgaatttcaccctttcatcgaagctcttctcccacatgtccgcgcattttcgtacacatggttcaacctccaagcaaggaaacgcaagtatttcaagaagcacgaaaagcggatgtcaaaggacgaggagagggcggtgaaggatgagttgttgggagagaagcccgagatcaagcagaagtgggcgtctcgactgttggctaagcttcgtaaggacatccggccagagttccgagaggactttgtccttactatcaccggcaagaagcctccatgttgtgtcctctctaacccagaccagaaagggaagatccggaggattgactgccttcgtcaggcagacaaggtgtggaggttggacctggtgatggtcatcctgtttaaggggatcccgctggagagcaccgacggggaacgtctctacaagtcaccccaatgctctaacccagggttgtgtgtccagcctcatcacattggggtgtccatcaaagagttggacctctacctggccttcttcgtccacacacccgattctggacagtcggacgcttcaaatcagactgaggtggatataaagccccctccaaatggtcacctgtcctttcaggattgctttgtcacctcaggagtgtggaacgtcactgagcttgtacgcgtgtcccagacacctgttgccacatcatctggccccaacttctcattggctgacctggagagcccaagctattacaatataaaccaggtgtcacttggtaggcggtccttaacgtcgcctccttccagcagttctaccaagcgccccaagtctcttgatgacagtgagatggagagtccagtggatgatgttttttacccggggacaggtcggtcgcctgcagcaggaggcagccaggccagtgtgtggccaaatgatgtagacacagggcctgggtcacttaaaaagccgggaaagctggatttctgcagtgctctgtcctcacagaccagttcctctcgaatggcattcacccatcaccctctcccagtgctggcaggagtgagaccaggaagccctcgggcatcagcgtctgctcttcacttcccctcaacgtccatcatccagcaatccagtccttacttcacccatccaacaatacgctatcatcaccatcatcatacccaggactctcttaaagagtttgttcagtttgtctgctcagacacctctggccaggggtcaggacagcattctcagcgccttcccccgccgggtccaacaggtttgtcacaattggatcacgagacaccaactttctgaacctcccccagcagtctcaatcctggttcctttgatattaccgccaagctgcgaatatgcgagctaaaggaacaacgttttgtgacacagaagcccaccctttacacaccgaccccccccccctccaccccatgcgtgactacaggacgacaacccctttctcccccccccccctcgcccagagcaagaacggaacagcgaaactctcacggagcgcgtgggatggaaattcccttactggggcgaactttttaatgtctgcgctgcctagcacccctctgatagttaaggtttaaaccactcatgtttcacccttccctcaccttccgccaacctatcatgtattttcagtgtttgttccctttgtcattcacactcttttcccccccaggagaaaggattgagctatgggacattggtcccctatagggtgacagttagataagggacacgcagtgcttccctcccagttcagggagacagatcgaaacataaaaaaacgatacatttcctagttagtgccgctaatttgtgaccactgtttccgaatgattggaatctcaccggaatagaagccttccccccagtaacatttatacagccatttgtcctatcaaccttcccattcagcaaaacagaaataacgtcatcgatatatctccccttacgattgcgttaatccgccttcgcctgggcgtaaacacgcgggacgaggatagaacgttaaacgctcaagtgcaatgatttcaattagcgtaggatgttttttttttttttttttcttaaggttaatatttaaacgagcaaaaatacatttctattttcgtgtaaaacgggcaaaaaaaataaatttgctttctgtttaaaaataaaaagtccgcgtctcccagtggactctaaaaacacagggaagctgtctgccatcagacattaagaaattgttttttaaaaattattttcttgcactaaataagattttttttttccggcatgttttctccttccattgcactatgacttttattaacagatcatttgtataaaaaaaaaaaaaaaa

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