LOCUS       NM_001127429            2181 bp    mRNA    linear   VRT 05-FEB-2024
DEFINITION  Xenopus tropicalis homeobox A3 (hoxa3), mRNA.
ACCESSION   NM_001127429
VERSION     NM_001127429.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166398.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166398.1, EG653237.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028291, SAMD00028292
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..2181
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /note="homeobox A3"
                     /db_xref="GeneID:100151729"
                     /db_xref="Xenbase:XB-GENE-482267"
     exon            1..179
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /inference="alignment:Splign:2.1.0"
     exon            180..741
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    276..278
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /note="upstream in-frame stop codon"
     CDS             297..1517
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /codon_start=1
                     /product="homeobox protein Hox-A3"
                     /protein_id="NP_001120901.1"
                     /db_xref="GeneID:100151729"
                     /db_xref="Xenbase:XB-GENE-482267"
                     /translation="

MQKATYYDSSAIYGGYPYQGANGFTYNASQQQYPPSSSLLETEYHRPACSLQSPGSAVPHHKANDINESCMRTINSQSNQAPVIPEQQPTPQGPPPSVSPPQTTSNAATASSNKATSITSPTMSKQIFPWMKESRQNTKQQKAGSSSSGESCAGDKSPPGQSSSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKSMMTSSGGQSPCRSPVPTPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHHPSAYGVPAPYPSPHNSCPPHQKRYSGTAAVTPEYEPHPLQQSSGAYGNPHVQGSPVYVGGNYVETMTNSGPSMFGLSHLSHSSSNMDYSGAGPMNSGHHHGPCDSHPTYTDLSAHHNPQGRIQEAPKLTHL"

     misc_feature    789..959
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1323..1508
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /note="Domain of unknown function (DUF4074); Region:
                     DUF4074; pfam13293"
                     /db_xref="CDD:463833"
     exon            742..2157
                     /gene="hoxa3"
                     /gene_synonym="hox1; hox1e; hoxa-3; hoxa3a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctgctcccatcctggggtcgtgttgtgcctggtgcttggaggtgatagcgcaggagaagtgctggtttagccacagcacagtgcccaggaattagttggagagcaagccagatttgttggttctggagcccaactggggtgtagtgtgttgtgttccgcgtcagtcgtcagaaactaaggtctgaccagcgaggccattggaggaggaacgccacgtgacagaggggtgccaatgttattctttacgggtgtcaagaccctgtcagtttgtgaaataaatattgggaaacaacgaaatgcaaaaagcgacctactacgacagctctgcgatctatggtggatatccctaccaaggagcaaatggtttcacttataatgcaagtcagcagcaatatcctccttcctcatctctgctggaaactgaatatcatcgacctgcctgctccctgcagtcacctggcagcgcagtgccccatcacaaggccaatgacatcaacgaaagttgtatgagaaccattaacagtcaatcaaaccaagccccggtcattcccgagcagcagcccacaccgcaagggccgccaccctctgtgtccccaccacaaaccaccagcaatgcagccacagcctcctccaacaaggccacaagcatcacctcacctaccatgtcaaagcagattttcccttggatgaaagaatcccgacagaacacgaagcagcagaaagcgggcagttcgagttcaggtgagagttgtgctggagacaaaagccccccggggcaatcctcttccaagagggcccgcactgcttacacaagcgctcagctggtagaactggaaaaagagttccactttaacagatacctgtgcagacccaggagggtggagatggccaatctgctcaacctcaccgagaggcaaattaagatctggtttcagaacaggcgaatgaaatacaaaaaggatcaaaaagggaaatccatgatgacctcttcaggagggcagtcaccatgtaggagcccagtgccgactccatctgttggaggttacctaaactctatgcattctttggtaaacagtgtcccctatgagcctcagtctcccccagcctttaacaaacaccaccctagcgcgtatggcgtgcctgcaccctacccaagcccccacaacagctgccctccccaccaaaagagatacagcgggactgctgcggtcacccctgaatatgagccacatcctctccaacaaagcagcggagcttatgggaatccgcatgtacagggaagccccgtttatgtaggggggaactatgtggagaccatgactaattctggaccatccatgtttggtttgtctcatctctctcattcctcatcgaacatggactacagtggagccggacccatgaacagtggtcaccaccatggaccctgtgactctcaccctacatacacggacttatctgctcaccacaatcctcagggaagaattcaggaagcccccaaattaacacatttgtaatgatcgtggagacaaattttccccttttttcctacttatttctattttactttccagtaaccccctttattttatattcaagattttgcgtgagtgtgtgtgccagtaatattcagtgcaagaaatactggctctttcagatataacattgtggcccttaggaacccgatttggaacaagtctttgtattttattcgtctcttttatcaaacagggtatagcaacaatttttatatggggaacaaattcttcttacatgtgaatttgtttgcacattttcttaacccacagggaacccatttaaattattattgcacttctattcaattgctagccaaatattaaaaaaaaacgcttgaacagggacatcccgatccataattatacgtgtaaatcatttaatgtgtgtattctgctgcatatactccggttaatttattatattttcatggaaaaaaaagaatcaacaaaactatcgaactgtttacatcttatttatcccatccttcatatttataaacaatatatacccttgctattcaggtcaggctctgggccttcagttaatggcacaggcagtgcttttgaaaaaaaattctcattaaagatgcaataaaatctgagagaatattaagatgaaaaaaaaaaaaaaaaaaaaaaaaaa

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