LOCUS       NM_001123020            2279 bp    mRNA    linear   VRT 17-AUG-2018
DEFINITION  Xenopus tropicalis paired like homeobox 2B (phox2b), mRNA.
ACCESSION   NM_001123020
VERSION     NM_001123020.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161760.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161760.1, EL662758.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00862019 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..2279
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /note="paired like homeobox 2B"
                     /db_xref="GeneID:100124329"
                     /db_xref="Xenbase:XB-GENE-1000415"
     exon            1..283
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /inference="alignment:Splign:2.0.8"
     CDS             43..924
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /codon_start=1
                     /product="paired mesoderm homeobox protein 2B"
                     /protein_id="NP_001116492.1"
                     /db_xref="GeneID:100124329"
                     /db_xref="Xenbase:XB-GENE-1000415"
                     /translation="

MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDEESKDSKSADPDSTGGPGNNPNPTPSCGGGPSPSGAQGNGVPQEPGKVGVPGPGSLTSASVVGVSGGPQGWATGPGGTITSIPDSLGGPFASVLSSLQRPNSTKATLVKSMF"

     misc_feature    337..507
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            284..471
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /inference="alignment:Splign:2.0.8"
     exon            472..2223
                     /gene="phox2b"
                     /gene_synonym="nbphox; phox2; pmx2b; xphox2b"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      

ctctgcagccacctccagggtgacacttccagagccacttcaatgtataaaatggaatattcttacctcaattcctccgcctatgagtcttgcatggctggcatggacacttctagcctggcctcagcctacgctgatttcagctcatgcagccaagccagtggcttccagtataatcctatcaggaccacttttggggccacttcaggttgcccgtcccttacccctggatcctgcagcctcggcactctcagagaccaccagagcagcccctatgcagcagttccttacaagctatttactgatcacggcgggctgaatgagaaaaggaaacagagaaggatacgcaccaccttcaccagcgcacagctcaaggaactggagagggtatttgcagagacccattaccctgatatctacacccgcgaggagctggcactcaagatagacctgacagaggccagagtgcaggtctggttccagaaccgcagggccaagttcaggaagcaggaaagagcagcagcagcggcggcagcagctgccaagaatggctcctcaggcaagaaatccgactcctcacgggacgaagagagcaaggactccaagagcgctgaccctgacagcactggtgggcctgggaacaacccgaaccccactcccagctgtggtggagggccaagtcctagcggggcacaaggaaatggggtcccacaggagccaggcaaggttggggtgccagggcctggaagcctaacatcagcatcggttgtaggagtttcaggtggaccacaaggctgggcaactgggccaggtggcaccatcacctccatccctgactccttaggaggccccttcgccagtgtcttatcttctctgcagagacccaacagcaccaaagccactctagtcaagagcatgttctgaactctaccccagccttatccttctgagtaacagtactagtcctcttagctacatggcccttgctcttgtgcttagtgagaaacagaacactgagagtaacattgacacgggccaggcctgcccgcaaccttcctggtgagatggaccctcgacatcggttcccttcttcaaagcagtgaaactgacggccgcatacaggaagctggtggcttcttagagccacaattgtggactccataactcacaaaatcatggttcccgagatgaagatctcatctaagaagaagcccaaggtttttattaagaacaaatggtcattctacagcaagtggttcagtaaagatggggggagcacgggaagccagcgggtacactgtatctagaaagagccattctctaaggtttctagctgcttggcttggggagcgatgcaatcgcatgtcaatgtcttgttcctccagctgttgtagaactacaacttccagcttgcattactagagggaatgctgggaagtgtaaaaacacaaaagatttagggacaggattctgacaaacagatgcattacacaactaaaaaaaaaatcccatctttatactgtaaattgaaaattgcccacaaatatgtattttctccaataaatatttagggaattttacaaaatcttcatctaaaaattgcactgcattacgggtggggtctgtcttttttcctactgaatctgtacatcgacgatggttgtatttatttattacattgattcaagcaaattaaaccattttttttaaaaaggcacaacaaaaattgtagatattagttggatgttaagaggtatgctttctattttctgtgtccttttcagccctgtaacgtggcagttgtatagtgttaatataagtacaaattgtctccagttgttggaagtaagtcatgccgaaccctctagtctgctttgtgtctaatgagaaaaaatataaggattttatgggttcaattcgtttgtctgtttgtttgttcgtttgtttgtttccttgtttcgttcaatgaagctggatttcacaacaaaacatacctttctatttttgttacactctgcatgttgtctatttcttcccgttagaaatggtggggggcagaatatccataaattatgttctggactaaagttatttatatgttgttataatgaatgcttctatttaatgaatcccatttttttttacatgtgcatttcgctttgatttttgggtttttttcttctccaaaattgtgccattaaaactgattgttgataataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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