LOCUS       NM_001114266            1108 bp    mRNA    linear   VRT 16-JUN-2023
DEFINITION  Xenopus tropicalis VENT homeobox 3 gene 1 (ventx3), mRNA.
ACCESSION   NM_001114266
VERSION     NM_001114266.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158379.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158379.1, CX467734.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00862006, SAMN09788948
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1108
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /note="VENT homeobox 3 gene 1"
                     /db_xref="GeneID:100135744"
                     /db_xref="Xenbase:XB-GENE-919686"
     exon            1..290
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    26..28
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /note="upstream in-frame stop codon"
     CDS             35..856
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /codon_start=1
                     /product="VENT homeobox 3 gene 1"
                     /protein_id="NP_001107738.1"
                     /db_xref="GeneID:100135744"
                     /db_xref="Xenbase:XB-GENE-919686"
                     /translation="

MEKTPYSVEWLSESSLGKPVYTKTEHTFGYSGLQFNKDCRTSLSSRPGNLRSSANSTEKENDGLSNVLNGRISVAAQIKTRPSLQEPEISRKVLREMQPTDQATNMTDSSKKSPSLSDEENVSRARTKFTPEQLKELERSFKENMYIGSSEKRRLSKVLKLSECQIKTWFQNRRMKLKRQSQDARVDAFFSSLYMPCYSYTGHSTSTYSVRAEFPALVPPPMASTVPPFGCIYSTVTPGVCQPALPSTSPGSNLCSSMPVHSLLRARQRYNPY"

     misc_feature    404..571
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            291..529
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /inference="alignment:Splign:2.1.0"
     exon            530..1037
                     /gene="ventx3"
                     /gene_synonym="vent-3; ventx3.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atttaagaagaagagaacacagcattaagcaactatggaaaagacaccctactcagtggaatggctttcagagagcagtctgggcaaaccagtatataccaaaacagaacatacatttggatactcaggcttgcagtttaacaaggattgcaggacctcattgtcatcaaggcctgggaacctaaggtcttcagcaaactcaactgaaaaggaaaatgatggcttaagcaatgttcttaatggaaggatatctgttgctgctcaaataaaaacccggccatcactacaagaacctgagatatctcgaaaggtgttgagggaaatgcagcccactgaccaggccaccaacatgactgacagtagtaagaaatccccatctttatctgatgaagagaatgtttccagagctcgcaccaagttcacccccgagcagttgaaggagcttgaaagaagcttcaaagagaacatgtacattggatcaagtgagaaaaggcgattgtccaaggtgctgaagctctcagaatgccagattaaaacctggtttcagaatcgaaggatgaagctcaagcgacaaagccaagatgcaagggttgacgctttcttttcaagcctttatatgccttgctacagctatacaggccattcaacatctacatactccgtacgggcagaatttcctgctttggttcctcccccaatggcttcaacagtccctccttttggttgtatttactctactgttacacctggagtctgccaaccagccctgccttctacatctcctggctcaaatctgtgctcttccatgccagtccattctttgctgagagctcgacagagatacaacccatactgacgttagaacattgtttggggtaccactgctatatttgaaagaagtgggaattgcaccctggcacttatataccaaacaaagctttcatttgaacagggaactgaaagtatgttattttttttaagaccttgattaattctttgttcaatcaaattatgtacaaataaataactgaaggtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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