LOCUS       NM_001097307            2186 bp    mRNA    linear   VRT 02-MAR-2021
DEFINITION  Xenopus tropicalis POU class 4 homeobox 4 (pou4f4), mRNA.
ACCESSION   NM_001097307
VERSION     NM_001097307.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC135127.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC135127.1, BX717483.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /map="8"
     gene            1..2186
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /note="POU class 4 homeobox 4"
                     /db_xref="GeneID:100037865"
                     /db_xref="Xenbase:XB-GENE-5996034"
     exon            1..183
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..1086
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /note="POU class 4 homeobox 1"
                     /codon_start=1
                     /product="POU class 4 homeobox 4"
                     /protein_id="NP_001090776.1"
                     /db_xref="GeneID:100037865"
                     /db_xref="Xenbase:XB-GENE-5996034"
                     /translation="

MMSMNSKQAFSMHPMLHEPKYAPLHASSEAIRRACLPAPQLQSNIFAGFDETLLRGAEALAAVDIVSQKTHPFKPDATYHTMNSVSCTPTSSSVHLHHPSVLTTHHSHHHPHHQPSQGLDSDLLEHLNPALTLGGVPDVGSTPSHPHAHMSAINHMAHHTQSMNLVHNHSLASHATISCSESETDPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTICRFESLTLSHNNMVALKPILEAWLEEAERAQREKMAKPEIFTGGDKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATY"

     misc_feature    604..837
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    892..1062
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            184..2171
                     /gene="pou4f4"
                     /gene_synonym="brn3a; Brn3d; oct-t1; pou4f1.2; rdc-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcttaaccaaattccaacctgctcatgcactagcaacacgggtctccacagtgcatttcaaaatgatgtctatgaacagcaagcaggctttcagcatgcaccctatgctacatgaacccaaatatgctccacttcacgccagctcagaagctattcggagagcctgtcttcctgccccacagcttcaaagtaatatctttgctggctttgatgagactttgcttagaggagccgaagctctggctgccgtggatattgtatcacagaaaacacatcctttcaaaccagatgccacatatcacactatgaacagtgtgtcctgcactccaacctcttcttcagtgcatctacatcacccttctgttttaacaactcaccactcacatcatcatcctcaccatcagccttcacagggtttagacagcgatctcttagagcacctaaatccagctctcaccttagggggtgtcccagatgttggatcaacaccctctcatccgcatgcccatatgtcagccattaaccacatggcccaccacacacaatctatgaacttagttcataaccactcactggcatctcatgcaacaatctcctgctctgaaagtgaaacagaccccagagaacttgaatcatttgctgagagattcaaacaaaggagaatcaaacttggggtaacacaggcggatgtggggtctgccttggccaatttgaagattccgggtgttggttgcctcagccaaagcacaatatgcagatttgaatcccttacactatcccataataacatggtggctctgaaacctattttagaagcttggctagaggaagcagagagagcgcaaagggagaaaatggccaaacctgaaatctttactgggggtgacaagaaacgtaaacgtacatctattgcagctccggaaaaaagatctctagaagcctattttgctgttcagccaagaccttcttcagagaagattgcagctattgcagaaaaacttgacttgaaaaagaatgtagttagagtctggttttgtaatcaaagacaaaaacaaaagcggatgaagttttctgcaacatactgaaaaacaaagcactgttttgaacttaaatatgaaactgatctcattctaagggaatttagatacactgagatacagtgtgtgtatcatttcagccttcagttttgtcttcatgctttggcaaataaatgaattgataagggactgtcactggaacccattagacacctgtaaagtcgtactggtgagtggaaagtttgggattctgtctttcgtttgaccgagtctctacggactcatattacctttgctttattaaataaaacatttaaaggcaatggaaatgaatgaaagtccagctaacaaaacttgaaatatctataatctctttctctcagtttgacctccccttttatatttattattgtaaataataatctgtgatgatattgcaccaatggttaaaagttttaagttattattattattattattaatataatttgctgtacagcacacaaactttgaatttaatttaaataaaataaaatccacctaaaataagccttgtcactgcatggtttacttcacttttccatctaaagaattccatcacattcgcaataaatgttatgtttctacctcatcagcagctagaaagcacatctggaaatgaatctgtatagaaaagcaaagcaagatagtcatatccctgcaatttcactgcaaagatgctttgacaatcaattcagttttttttttcacattgattcctctatttcccgtgacggtatatttggggactcagtattgtctgcagtgatgaagcacagtatccctatccctgcgtgtgtgcgttgttttattttggtgacgacaactgacgacacagatgagagttttattttttaaagttcgaaagtttaacttaaccattacggattacacaatgatatttaaagttaattattttggaaatatttaacactgcactttcttggcaagacacatattgcttggcatataatagagaaatttccctctgtttctttttttatgaatatttacttttctatgtgtgtaatgaatgacattttgtgtctgtgtatgctacagaatttcaaataaaccatgcacgatttacctcaaaaaaaaaaaaaaaa

//