LOCUS       NM_001097157            1102 bp    mRNA    linear   VRT 28-OCT-2016
DEFINITION  Xenopus tropicalis HOP homeobox (hopx), mRNA.
ACCESSION   NM_001097157
VERSION     NM_001097157.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC121643.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC121643.1, CR444746.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01758129 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..1102
                     /gene="hopx"
                     /gene_synonym="cameo; hod; hop; lagy; necc1; ob1; smap31;
                     toto"
                     /note="HOP homeobox"
                     /db_xref="GeneID:780767"
                     /db_xref="Xenbase:XB-GENE-480601"
     misc_feature    35..37
                     /gene="hopx"
                     /gene_synonym="cameo; hod; hop; lagy; necc1; ob1; smap31;
                     toto"
                     /note="upstream in-frame stop codon"
     CDS             41..283
                     /gene="hopx"
                     /gene_synonym="cameo; hod; hop; lagy; necc1; ob1; smap31;
                     toto"
                     /codon_start=1
                     /product="homeodomain-only protein"
                     /protein_id="NP_001090626.1"
                     /db_xref="GeneID:780767"
                     /db_xref="Xenbase:XB-GENE-480601"
                     /translation="

MSSHQKEKWGSDSTGLTNQQIEVLEYNFNNVSKQPHNTSIMLIAAETGLTEEETKKWFKERLAKWRESEGLPRHCGSVMD"

     misc_feature    80..238
                     /gene="hopx"
                     /gene_synonym="cameo; hod; hop; lagy; necc1; ob1; smap31;
                     toto"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(83..85,206..208,215..220,227..229)
                     /gene="hopx"
                     /gene_synonym="cameo; hod; hop; lagy; necc1; ob1; smap31;
                     toto"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

ctccgtcctgcctgtcctgcaggtttttcagacctgaataatgagctcacaccaaaaagaaaaatggggaagtgacagcacaggactaacaaatcaacagatagaggtccttgagtataacttcaacaatgtcagcaagcagcctcataacacttctatcatgctaattgctgccgaaacaggactcacagaggaagagactaaaaaatggttcaaagagcggttagccaaatggagagagtctgaaggtctgcctaggcactgtggatcagtcatggactaaatgaactttattgccacatgaatttggtgttaggggactggaggagcagctttaattttgaaatcattttatttttagttacagatgtgagcattatgtaaataaatatctatttaagtgtgtactccatctatagaaacattgataaatatatacctgaatgctttgttaaagtgatactgacaaaaaaaaaaaaaaaactttttaaaatatgaatctacataaaaagttacttataggtcatgttgatcgtttgttgctgatagggctgctttcgtaagtaattgttacttgaagttcctgactgaaacctgactgttttgccaacctgactgtcccttctcagcctgtcagttatagcttctaatgctaacagactcctgctgcacaaatatggcagccccctttataggcgaacatgggggatcagatagggaatgtaaaagcatttgacaaatacttttatggcaaaattataaatagcatgcaaagacaatgttatgacatgtcagtatctctttaataaatatatcaatgtaatatataaaccatggatttgcatgtgagtaaaggaatttctaataaattataaaaacggaaataatctgccaatatatatatatagtaagataaattatttttgtatttgaaactatcaacattggtatagtaatacaataaaaaatagttatatctctgagaatctaagagaaaaaatgccaaatattaatgcagcattaatgattttaaacatagttgatctattatgaacatgtcatgtttaatgttttctctctttttaaaaaaaaaaaaaaaaaa

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