LOCUS       NM_001079091            1580 bp    mRNA    linear   VRT 04-FEB-2024
DEFINITION  Xenopus tropicalis ladybird homeobox 1 (lbx1), mRNA.
ACCESSION   NM_001079091
VERSION     NM_001079091.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC122077.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC122077.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028293, SAMD00028294
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1580
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="ladybird homeobox 1"
                     /db_xref="GeneID:780014"
                     /db_xref="Xenbase:XB-GENE-6455157"
     exon            1..694
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    277..279
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="upstream in-frame stop codon"
     CDS             370..1167
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="ladybird homeobox protein homolog 1; transcription
                     factor similar to D. melanogaster homeodomain protein lady
                     bird late"
                     /codon_start=1
                     /product="transcription factor LBX1"
                     /protein_id="NP_001072559.1"
                     /db_xref="GeneID:780014"
                     /db_xref="Xenbase:XB-GENE-6455157"
                     /translation="

MTSKDEAKSSSVEERRRHALDLLPPPANSNKPLTPFSIEDILNKPSVRRSYTICGTAHLLSTAEKPPAAGLPLSSRALLSQTSPLCALEELASKTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESVKKMSPSTVEAVLTISELEEETNSVRDDSRSRSPQLGLSGHMPLSPSSPLTEQHTSKECSEDEEDVEIDVDD"

     misc_feature    370..468
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0P4H6.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    745..915
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1003..1164
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0P4H6.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            695..1572
                     /gene="lbx1"
                     /gene_synonym="hpx-6; hpx6; lbx1h"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcaatgtatcagtcgctgtgggattttttttaccttctccctgggcaaaggatgaatttagctgggagtaggcagaattctctctaaaggttccacaaggggagagaaaaacatccagcaaacaccgatccgggacaatcagtggcaggagagaaaaaaaaaaaagtcctcttcgaatctgggtggtggaatccttgactactcattgacttctccctccccccccccttcttgtaaaatcattttaaccttgcagattgagtctcgtccgcctttaagaaggcagcagagagagagaccttcctgctggagcagtgggagaactttttttttttttgaggagctctcaccaaggtagaaagtccaccatgacttccaaagatgaagccaaatcgtcttcggtggaggaaagaagaaggcatgccttggaccttttaccccctcctgctaattctaacaagcccctgacccctttcagcatcgaggatatcctaaacaagccctcagtcaggagaagttacaccatatgtgggacagctcacctactaagcactgctgagaagccccctgctgcaggcttgcccctgtccagtagagcccttctctcccaaacctcccctctctgtgccctggaggagctggccagcaagacctttaagggactcgaagtgagtgtcctgcaggcagcagaaggtcgagacggcatgacgatttttggccaaagacagacacctaaaaagaggagaaagtcgagaacagcttttacgaaccaccagatttacgagttggagaaacgatttttgtatcagaaatatttatctccggccgacagagatcagatcgcccagcagttgggactgaccaatgcccaggtgatcacctggttccagaatcgcagggccaagctgaagagggatctggaggagatgaaggcagatgtggagtcggtgaagaagatgagcccttccacagtggaagccgtactcaccatctcggagctggaggaggagaccaactctgtgagggatgatagccgctcccggtcgccacaacttggactaagtggccacatgcccctctccccttcatccccactcacagaacagcacacaagcaaggagtgctcggaggatgaggaggatgtggaaattgatgtcgacgactgactttttcccattttaataactcacagactgatacggagcatggacattatttatatgctgaacttctctcatctttttttcttctgtttttcctttcttttttttctaaaaacagaaactcagacacaatcctattgacacctaaaggcagtttcttttcaatttaaagcaataagaaatacaaggaaagactaaatttacccacggctgcccagtcaggtagattttgtttgtttgtttttgttttcttttggaatggtgcaattatgtatggcttctgtaaaaaaaaaaaaaaacccaaatatttaaagttatttttttaggcttcgattctactaaacatcatttacagatccgatacctttagataaacccttttttttgcagtaaaataatttcagtgtgaaaaaaaa

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