LOCUS       NM_001078749            1898 bp    mRNA    linear   VRT 16-JAN-2025
DEFINITION  Xenopus tropicalis calcium channel, voltage-dependent, gamma
            subunit 8 (cacng8), mRNA.
ACCESSION   NM_001078749
VERSION     NM_001078749.2
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AAMC04000007.1.
            
            On Jan 16, 2025 this sequence version replaced NM_001078749.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC118795.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028304, SAMD00028308
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            non-AUG initiation codon :: inferred from conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               AAMC04000007.1     116335256-116335400
            146-708             AAMC04000007.1     116357458-116358020
            709-792             AAMC04000007.1     116363101-116363184
            793-933             AAMC04000007.1     116373633-116373773
            934-1898            AAMC04000007.1     116374256-116375220
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1898
                     /gene="cacng8"
                     /note="calcium channel, voltage-dependent, gamma subunit
                     8"
                     /db_xref="GeneID:779664"
                     /db_xref="Xenbase:XB-GENE-986071"
     exon            1..145
                     /gene="cacng8"
                     /inference="alignment:Splign:2.1.0"
     exon            146..708
                     /gene="cacng8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    408..410
                     /gene="cacng8"
                     /note="upstream in-frame stop codon"
     CDS             453..1514
                     /gene="cacng8"
                     /note="non-AUG (CUG) translation initiation codon"
                     /codon_start=1
                     /product="voltage-dependent calcium channel gamma-8
                     subunit"
                     /protein_id="NP_001072217.2"
                     /db_xref="GeneID:779664"
                     /db_xref="Xenbase:XB-GENE-986071"
                     /translation="

MESWKRWNEGRMVWCEKGVQILLTTVGAFAAFGLMTIAIGTDYWLYARAFICNTTNISSEETPQKDKKDPGGLTHSGLWRICCLEGQKRGICVKINHFPEDTDYDHDSAEYLLRVVRASSIFPILSAMLLLLGGLCVAASRVYKSKRNIILGAGILFVAAGLSNIIGVIVYISANAGDPGTKRDDEKKSHYSYGWSFYFGGLSFIIAEMIGVLAVNIYIEKNREAHCKSRTELIKNPSAILRLPSYRFRYRRRSRSSSRSTEPSQSRDTSPVGVKGIPSTDISMYTLSRDTSKANVSSLYNTERGDHSFLQLHNCFPKDSGVTVTVTGPASNTGTLGKDGSNTNTLNRKTTPV"

     misc_feature    501..1094
                     /gene="cacng8"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            709..792
                     /gene="cacng8"
                     /inference="alignment:Splign:2.1.0"
     exon            793..933
                     /gene="cacng8"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1898
                     /gene="cacng8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccctcttaaaataaacgccatttcacagaatcttccagggtatgggggaaagagaagcccaagtatccagggaattggcaggcatcttctgatcatacatacacacaggcatacatcttcttcaaagcacacgttttaacaaaaggtttgtgatgctagctgtatctttatccttttgatgccaagaagtacggagccgactataaacagtcaatggaagaaaatctagggcttgttaagaagataatcctgggtgagtcagtggctccctttggcgtcctttggcaaaaacatctcagttactgctgacatccaaaagcagagaaaaagaacatcaggagaaagtgataaacaaccaaagaacaaagcaaaaaagacccaagaagaagtcattgagcttcttctcctagaaacacatttcctttgtatcggaacccccccagtctgtcaccctggagtcgtggaagaggtggaatgagggcagaatggtgtggtgtgagaaaggggtccagattcttctgaccacagtgggagcttttgctgcttttgggcttatgacaatcgccataggaacagattactggctttatgccagagccttcatctgcaataccaccaacatctctagtgaggaaacaccacagaaggacaaaaaggatcctggagggctgactcattctggcctatggagaatctgctgcttggaaggccaaaagagaggcatttgtgtaaaaatcaatcactttccagaagacacagactacgatcacgacagtgctgaatatcttctgcgtgttgttcgtgcttcaagcatcttcccaatcctcagtgccatgctcctcttactcgggggcctttgcgttgctgccagtcgtgtttacaagtccaagcgcaacattatcttgggggctggcatcctattcgttgctgcaggtttaagcaacattattggtgtgattgtttacatttctgcaaatgcgggagatcctgggacaaagagggatgatgagaagaaaagtcattactcatatggctggtctttctacttcggggggctttcttttatcatcgctgagatgattggcgttttagcagtaaatatctacattgagaagaacagagaggctcattgtaaatcacgcacagagctgatcaaaaatccttcggccattctacgcctaccaagctatcgttttcgatatcgccgacgctcaagatctagttcacgctctactgaaccttctcagtcaagggacacttctcctgtaggtgttaaagggataccttcaactgacatctccatgtacaccctgtcaagagatacctcgaaagccaatgtaagcagcctgtataacactgagcgtggggatcacagttttctacaacttcacaactgctttcccaaggattccggggtcaccgtcaccgtcacaggaccagcctcaaatacgggcaccctgggcaaggatggttccaacaccaacactttaaacaggaaaaccacacctgtgtaggtgggcccaaggcaaaggtcttcttagtgagtgtgagtgagcgtgagagatgaagtatgagttttgggatggaagaaggagccattttttttgccatgtatctaccagttcctggtataaagtaagatgtagggtcagcacctctcttaccagtaaacagtaagttcaaattttggactctagtccgtgttctgaaatctctattacagaattttgatagaaaaaaaaaacctcttcataattttcaaatttcataatttctttcctaagctaagataaggcaacatctaaccaggccaatcattcccattcgttgtttgacagatttaaatctctactgctgctaagacgtttctttttctttcacaagattcttgcaaaaaa

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