LOCUS       NM_001016504            2538 bp    mRNA    linear   VRT 01-FEB-2024
DEFINITION  Xenopus tropicalis POU class 3 homeobox 1 (pou3f1), mRNA.
ACCESSION   NM_001016504
VERSION     NM_001016504.2
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098088.1.
            
            On Jun 19, 2005 this sequence version replaced NM_001016504.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098088.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..2538
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="POU class 3 homeobox 1"
                     /db_xref="GeneID:549258"
                     /db_xref="Xenbase:XB-GENE-853354"
     exon            1..2516
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..1162
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /codon_start=1
                     /product="POU domain, class 3, transcription factor 1"
                     /protein_id="NP_001016504.1"
                     /db_xref="GeneID:549258"
                     /db_xref="Xenbase:XB-GENE-853354"
                     /translation="

MAATAQYLPRNNSLPSNPLMHPDSDRMHQGTTYREVQKMMHQEYLQGLATNAGHPMSLTHHQWLPNPASDWGSGSHLGAQAEHGKSGVQSSREDLSSSFHHHRSHLVHQQTPSSHAWAQSGGHHLPPMSPGSNSHQPLIYSQSSYTNLNGMLGPQASSLHHSMRDPLHDDPGVLDTHVESPPQHLSHHQDHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSTTGSPTNLDKIAAQGRKRKKRTSIEVGVKGALENHFLKCPKPSAHEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPAGVPHPPMEDVYSQAETPPLHHTLQTSVQ"

     misc_feature    35..121
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4QQQ7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    200..451
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4QQQ7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    485..634
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4QQQ7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    614..838
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    893..1063
                     /gene="pou3f1"
                     /gene_synonym="nrl-22; oct-6; oct6; otf6; pou3f1-a;
                     pou3f1-b; pou50; scip; XLPOU1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
ORIGIN      

ctgggaagtggcagtcagtaaaggagtaggagccatggcagcaactgctcagtacctgccgaggaataacagcttgccttccaatccgctcatgcatccggactctgacaggatgcaccaaggtaccacctacagagaggtgcagaagatgatgcaccaagagtatttacaaggcttggccactaacgccgggcatcccatgagtcttacccatcaccagtggctgcccaatcctgccagcgactggggcagcggatcccatctgggcgcacaggcggagcatgggaaaagtggggtgcagagtagccgggaggacctgagcagcagcttccatcaccacaggtcgcacctggttcatcaacagactcccagcagtcatgcatgggcacagagcggggggcatcacctgcctcccatgtcccccggctcaaacagccaccagccccttatctactcgcagtcctcttacactaacctgaatggcatgctgggaccccaggcttcctctttgcaccacagcatgagagaccccttgcacgatgaccccggagttcttgatactcacgtagagtcccctcctcagcatctcagccaccatcaggaccactcagacgaagacgcccctagctccgatgacctggaacagtttgccaaacagttcaaacagaggagaatcaagctgggcttcacacaggcagatgtgggcttggccctgggcaccctctatgggaacgtcttctcccaaactactatctgcaggtttgaagcgctgcaactgagttttaagaacatgtgcaaactgaagcccctactgaacaagtggttggaggagacagattccacaacggggagccccactaacctggacaagatcgcagcccagggcaggaaaagaaagaagaggacctccattgaagttggggtgaagggggcattggagaaccatttcttaaagtgccccaagccctcagctcatgagatcacatccctggcagacagtctccaattggagaaggaggtggtgagagtttggttttgcaacagaaggcagaaagagaaaaggatgaccccagcaggggtccctcacccccccatggaggatgtgtattcacaagcagagacccctccactccatcacacactgcagacctcagtacaatgactaagaaatatataaaagaggggaattgtgagggggtgggatgaagtaagtacttttggattttacaaaagaatatagttacaggacccttaggaaaagactggaaaatctcttgccagaagacaaatataagacacgcaaaccacaataaaagcaaacaaacaaaaaaaaaacctttcccaattctgtttggtacaactccgctcatctagtgttcttgttccttcttgaaggtaaaaggaaaaaaggggtgggtgccatttattaaccagaaatccgagggataagttcaaaattctatgaactgtgaatattttttattattgtaaatgtaaattctcattctcacaaagactttggtagctttgaatggatatatgtgtgttatttattaaatagtcagttaacccctaaagttctgtaaaagggcatatctttggcttggaaaggggtttttagatacccctgctgtttaaaacacgaaaaagtatatatttatttgggattcaaaaatgattaaatcactcatctttgttttatctaaaagataacatatccaaaggttcttgttttattttatttttttcctttttgtcatgaatttatgattctttctcttgtcaggggcaaatcattgcctgagaaagttcatgctgcactagcatttctctgactttcctgccacacaattctttacaatgggatctgcaatgaagtaattttacaatatcaattgttaatgctattttgtacccattttcatttacttgctgctcctaacaaaaaaaaaatcacatgccacatgtttaagttctttagcatggcattttatatttgtgcccaaaagaataaacccaacaaacagctcacaaatctccaaaggcttctgaaaatagtttgtgtacaaaaaagagggggaagatatagaaaaccaacaaacacaaaaaacagacatattccattataaagcaaataaactctaaagaagatttttaactgaattgtaaatatgtgttatatgtatacatatgtacgtttttgaaatttgtgtgatgatgtttttgtttgtttctggttttttttttcattctacacacttttgtacatttactaatttgaagaggatattttaatattatttccatataaacttgaccccccccctactatttattttgtcagtttttgttttcaagtttggctctgtaaattactttgcaatatatatattttttttggtttggtgaattctgtttgtaacttttacaaatatagattttgcaattttactttttatatttatgttaaagtaatatggtattacttacataaaaaggaagcccttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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