LOCUS       NM_001016337            2516 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Xenopus tropicalis POU class 2 homeobox 1 (pou2f1), mRNA.
ACCESSION   NM_001016337
VERSION     NM_001016337.3
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR942771.2.
            
            On Apr 20, 2007 this sequence version replaced NM_001016337.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR942771.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="2"
                     /map="2"
     gene            1..2516
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="POU class 2 homeobox 1"
                     /db_xref="GeneID:549091"
                     /db_xref="Xenbase:XB-GENE-853992"
     misc_feature    21..23
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="upstream in-frame stop codon"
     CDS             141..2414
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="pou2f1 related; pou domain class 2 transcription
                     factor 1; octamer-binding protein 1"
                     /codon_start=1
                     /product="POU domain, class 2, transcription factor 1"
                     /protein_id="NP_001016337.2"
                     /db_xref="GeneID:549091"
                     /db_xref="Xenbase:XB-GENE-853992"
                     /translation="

MKLHSSSKIPNHAWLSDARMNNPSETSKSSESGDGNTGTQTNGLDFQKQAVPIGAITSAQAQALLGHLHQVQLAGTSLQAAAQSLNVQTKFKEEPGEPTQAVQPSQQPSLQAAIPQTQLMVAGGPITGLTLTPAQQQLLLQQAQAQLLAAAVQHSASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLPPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATPTRTIAATPVQQLPQSQTTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENITSDSSLSNQSVLNSPGHGMEGLNRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGGSSSSPIKSLFSSANPLVATTPSLVTSSTATTLTVNPVLPLTSAAAITSFPVPGTTGTSSANTATVISTAPPVSSVLTSPSLSPSPSATAATSEASTASGTSTTHTTSTPLTSPLSTGQVMVTASGIHTAATALQGAAQLPTSASLAAMAAAAGLNPGLMAPSQFAAGGALFSLNPGALGSALSPALMSNSTLATIQALASSGSLPITSLDATGNLVFANAGGTPNIVTAPLFLNPQNLSLLTSNPVSLVSAASTGVTGPITSLHATTSSVDSVQNTLFTVASASGAASTTTSASKAQ"

     misc_feature    141..269
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q28BL7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    951..1025
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q28BL7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1020..1244
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    1263..1334
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q28BL7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1326..1496
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1536..2369
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; Region: POU2F1_C; pfam19536"
                     /db_xref="CDD:437368"
     misc_feature    1734..1862
                     /gene="pou2f1"
                     /gene_synonym="NF-A1; Oct-1; oct1; OTF-1; pou2f1r; XOct1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q28BL7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
ORIGIN      

cggcagcagggacgcagatgtaaaaaggagcaggtttggtgtcaccaaatcattttctaagtctatccagcgtttattttttaccggaagagcctgaaataagtagaacactctgggaagagcagtcgtctttatacaccatgaaattgcattcttcttccaagattccaaaccatgcctggctgtcagatgcaagaatgaacaatccgtcagaaaccagtaaatcatcagagagcggggatggaaacacaggcacccaaacgaatggcctggactttcagaaacaagcggtgcccatcggagccatcacatcagcccaggcacaggctttgctcggacatctccaccaggtccagctcgctggcacaagtttacaggctgctgcacagtccttaaatgtacagactaaatttaaagaagagcctggggagccgacgcaagcggtgcagccttcccagcagccctcactgcaggcagccatcccccagactcagctcatggtagctggcggaccaatcactgggctcacactgacgccggcccaacagcagctgctactacagcaggcccaggcccaactactcgcagccgcggtgcagcattctgccagccagcaacacagcgccgccggtgccaccatctccgcctctgccgccactccaatgacacagattcccctgtctcaaccaatacagattgcacaggatttacagcagctgcagcagcttcagcaacaaaatcttaacttgcagcaatttgtgttggtgcatccaaccaccaacctgccgccagcgcaattcatcatctcacagacgccgcaggggcagcaaggcctcctgcaggcgcagaatctcttaactcaactacctcagcaaagccaagccaacctcctgcagtctcagccaagcatcaccctcacctcacagccagcaacccccacgcgcacaatagctgcgacccctgtacagcaacttccacagagccagacaacaccaaagcgaatcgacaccccaagcctggaggagcccagcgaccttgaggagcttgagcagtttgccaagacgtttaaacaaagacgcatcaaactcggattcactcagggtgatgtggggcttgctatgggcaaactctatggcaatgacttcagccaaactactatctcccgcttcgaagccttgaaccttagctttaaaaatatgtgcaagttaaagcctcttctggaaaagtggctcaatgacgccgaaaacataacgtctgactcttccctgagcaaccaaagtgttctgaactcgccaggacatgggatggaagggctgaatcgcaggaggaagaaacgcaccagcatagagaccaacatacgagtggccttagagaagagtttcctggagaaccaaaagcctacctcggaggagatcaccatgatcgcagaccagctgaacatggagaaagaagtgatccgtgtctggttctgcaaccggcgccagaaagagaaacggataaaccccccgagcagcggtggatccagcagttctcccattaaatcactgttctccagtgcaaatccgctggtggccactaccccgagcctagtgaccagtagtacagcaaccacactgactgtaaacccagtgctcccgcttacaagtgctgctgctataaccagctttcctgtcccaggcacaacaggaacttcctcggccaacacagcaactgtgatctcaacggcgccccctgtatcctctgtcctgacgtctccatctctaagtccttccccctcggctactgcggcaacatcggaagcgtccacagccagcgggacgagcacgacgcacaccacatccactccattgacctctccattaagcactggccaagtcatggtgactgcatccggaatccacacggcggctacagcactacagggcgcagcacagttgcctaccagtgcaagtcttgctgccatggctgctgcggcaggactgaacccagggcttatggcgccctcacagtttgccgctggaggtgccttatttagcctcaatccaggtgccctggggagtgcccttagccctgctctcatgagtaacagtacactggcaacaattcaagctcttgcatctagtggatctcttccaataacatcactggatgctactgggaacttggtctttgccaacgctggagggacccctaacattgtgactgcccctttattcctcaatcctcagaacctttctctactcaccagcaaccccgttagcttggtctctgcagcctccactggggttactggccccatcacaagccttcatgccaccacctcttcggtcgattccgtccagaacacactatttaccgtggcctctgccagcggagctgcttccaccacaacatcagcctccaaggcacaatgagttttggtgggggggcgggacatgggcatgcaaaccagaccatggtagcattgtcgcttactggtagcgatcaactacaataataaaaaaaaaaaaaaaaaa

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