LOCUS       NM_001016259            1734 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis claudin domain containing 1 (cldnd1), mRNA.
ACCESSION   NM_001016259
VERSION     NM_001016259.3
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR761716.2.
            
            On Aug 31, 2012 this sequence version replaced NM_001016259.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR761716.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1734              CR761716.2         2-1735
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1734
                     /gene="cldnd1"
                     /note="claudin domain containing 1"
                     /db_xref="GeneID:549013"
                     /db_xref="Xenbase:XB-GENE-959962"
     exon            1..226
                     /gene="cldnd1"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    155..157
                     /gene="cldnd1"
                     /note="upstream in-frame stop codon"
     misc_feature    200..202
                     /gene="cldnd1"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     MKRDRSPTVVIDAEPCSFQPVVRK"
     exon            227..551
                     /gene="cldnd1"
                     /inference="alignment:Splign:2.0.8"
     CDS             272..1030
                     /gene="cldnd1"
                     /codon_start=1
                     /product="claudin domain-containing protein 1"
                     /protein_id="NP_001016259.1"
                     /db_xref="GeneID:549013"
                     /db_xref="Xenbase:XB-GENE-959962"
                     /translation="

MDNRFATALVIGSVLSLLSVIYLSAAVGTVSWYHYFTSSAQANISYTTPEDFTSDAEKMDEKAYTDALFHFNGSLGLWQRCITVPQDHLSQQLSALTDSPTLFSCVFLSLSDQFLEKYQEPGNHNSEIDIVRTYLWRCQFLLPLVALGLIFFGALVGLAGCVCQSLYPALGTGILHLLAGVCTLGSVLCFSSGIHMLEQRLPLPTGIRGEYGWSFCLACVCSPLQVMAGALFLWASRASRREYSLMKAYRVA"

     misc_feature    320..970
                     /gene="cldnd1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            552..671
                     /gene="cldnd1"
                     /inference="alignment:Splign:2.0.8"
     exon            672..809
                     /gene="cldnd1"
                     /inference="alignment:Splign:2.0.8"
     exon            810..1724
                     /gene="cldnd1"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      

ggagtcagaattagattttgactgaaaggttaaagagtctgatacatcctttggttgcgctctaatgtattagaggtcactttttcaaaatccctggctttaattaaatccggttgagtctattaatctgcaaggaaagagagccccccactcctaaaatgtccagcatgtgaatccaaaatctgatcttgacttctgcatgaagagagacaggtctccgaccgtggtgatcgatgctgaaccctgttctttccagcctgttgttagaaagatggataaccgttttgcaactgcgctagtgattggcagtgtactgtcactgctttctgtgatttacctctctgctgcggtgggaacagtatcatggtatcactattttacctcatcagcccaggccaatatcagttacactactcctgaagactttacaagtgatgcagaaaagatggacgaaaaagcgtatactgatgcacttttccacttcaatggtagtcttggcctatggcagagatgcattacagtcccacaagatcacttgtcccagcagctcagtgctctcacagattccccaactttatttagttgtgtattcctatcgctttctgatcagtttttggagaagtatcaagaaccaggaaatcacaactctgagattgatatagtgcggacttatttatggaggtgtcagttccttctcccattagttgccctggggctaatattttttggtgctcttgtgggccttgctggatgtgtatgccaaagtttataccctgccctgggcacagggattctgcacctactagcaggtgtatgtacccttggttcagttctgtgcttctcaagtggtatacatatgctcgagcaaagactccctctccctactggaataaggggtgaatatggatggtctttctgcttagcttgtgtttgctcacccctacaggttatggctggagctctgtttctttgggcatctcgtgcaagccgtcgagagtactctctaatgaaggcttatcgtgttgcatgaaagtagttgtatttatgaaaacagtttgataggcacctgtaaatttagccttgttttatattttaaggctttttttttcttttagcttcctcattcttctagtgatgagcaggtaaagaaaaaaaaaaattaaacaaacttgtcccttactctttatttacaaccatttctggcagtgtccatccattttttttccacaaattgtagatgactttcatgggtttctgtcacccacttatcacttatttggtactttacataaatggttgattcacagtgcagctctggataggaagatataaaaatatttcttatgcatggtaaaagaccatattttcttgataagacttggtacaattaatactgacaatgcacttttagagccatcctttatattagtataggtaattgtagttaaaaggacattgttatcccttgtggcaaaattgctcccaagcagcaaatgcagccctctgctaaatactgggggcacccatggcagctgctgttggtgacacactgtcccatgttagctgtctttaatctattaaaaaacaaaggcattcagaaatttagtgcactcaagatttaaacttaagattcaagaaatatttttgtgaattccccattgtgttggttgaaaatgggcatagctccacctttacttctaaaacaatcgttacctgaaaaaaaaaaaaaaaaaa

//