LOCUS       NM_001015971            1964 bp    mRNA    linear   VRT 28-OCT-2016
DEFINITION  Xenopus tropicalis homeobox B3 (hoxb3), mRNA.
ACCESSION   NM_001015971
VERSION     NM_001015971.2
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR848404.2.
            
            On Oct 14, 2005 this sequence version replaced NM_001015971.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR848404.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00861986, SAMN00861990
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="10"
                     /map="10"
     gene            1..1964
                     /gene="hoxb3"
                     /gene_synonym="hox-2.7; hox2; hox2.7; hox2g; hoxb-3"
                     /note="homeobox B3"
                     /db_xref="GeneID:548725"
                     /db_xref="Xenbase:XB-GENE-482576"
     misc_feature    103..105
                     /gene="hoxb3"
                     /gene_synonym="hox-2.7; hox2; hox2.7; hox2g; hoxb-3"
                     /note="upstream in-frame stop codon"
     CDS             130..1290
                     /gene="hoxb3"
                     /gene_synonym="hox-2.7; hox2; hox2.7; hox2g; hoxb-3"
                     /note="Hox 2.7; homeo box B3"
                     /codon_start=1
                     /product="homeobox protein Hox-B3"
                     /protein_id="NP_001015971.1"
                     /db_xref="GeneID:548725"
                     /db_xref="Xenbase:XB-GENE-482576"
                     /translation="

MQKASYYDNPTLFGGYPYQAGSLGYEGPQQSFPTSSHMDNEFQRSSCSLQSLGHSGPLVKAKNLNGSCMRPNLSSEQSQPLSPTANPSSNTNSSSSQASLSKPSPAKSQASGSPASKQIFPWMKESRQNSKQKSSPPAPAAESCGGDRSPPGSSASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKVKGMSSSSGGASPTSTPPLSMQSSAGFLGSMHSMTANYEAPSPPPFNKSHQNAYYQNPGKGCPSQQKYGNTAAEYDHHGLQGNGGAYVSPNMQGSPVYVGGNYVDSVPAQGPPLYGLNHLAHQPTNMDYNGAPPMPASQHHAPCDPHPTYTELSAHHQGRIQEAPKLTHL"

     misc_feature    598..768
                     /gene="hoxb3"
                     /gene_synonym="hox-2.7; hox2; hox2.7; hox2g; hoxb-3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    1102..1281
                     /gene="hoxb3"
                     /gene_synonym="hox-2.7; hox2; hox2.7; hox2g; hoxb-3"
                     /note="Domain of unknown function (DUF4074); Region:
                     DUF4074; pfam13293"
                     /db_xref="CDD:463833"
ORIGIN      

tcctttgtgatcctttaggtcgcttccccgaagatattccgtgccaggtgactgtggggtgccaatgttattctgtaagggtggggacaccctccgagtcggtgacagctgtttttggggatcccggagatgcagaaagcatcctactatgacaaccccactctgttcggaggttacccctaccaggcagggagtctgggctatgaaggcccccagcagtccttccccacttcttcccatatggacaatgaattccagcgctcctcctgctccctgcagtctctggggcacagcggccctctggtcaaagctaagaacctaaatgggagctgtatgcgccccaacctgtcctctgagcagtcccagcccctgtctccaacggccaaccccagtagcaacaccaacagcagcagctcccaggcttccctcagcaagccctctccagccaaaagccaggccagcggcagcccagccagcaagcagatcttcccttggatgaaagagtccagacagaactccaaacagaaatccagcccccccgccccagcggcagaaagctgcggcggtgacaggagccccccgggttcgtctgcgtccaagagagcgcgtacggcctacaccagcgcccaactggtcgaactggagaaggagtttcacttcaaccgctacctgtgccggccccgccgggtggaaatggccaatctgctcaacctgagcgagaggcaaatcaagatctggttccagaaccggaggatgaagtataagaaagatcaaaaggtaaaaggcatgtcttcttcatcaggaggagcttcaccgactagcacaccgcccctgagcatgcagtcgtctgcagggttcctgggatccatgcactctatgactgcgaattatgaggcgccctccccgcccccgtttaataagtcccaccagaatgcctactatcagaaccctggcaaaggttgcccctctcagcagaagtatgggaacactgctgcagagtacgaccaccatggcttacaagggaatgggggcgcctatgtgtcccccaatatgcaaggaagtccggtgtacgtagggggtaactatgtggattctgtgccagcacaaggcccgcctctttatggtctcaaccaccttgcacaccagcccaccaatatggactacaatggggctcctcccatgccagccagccagcaccatgcaccttgtgacccccacccaacctacacagagctctcagcccaccaccagggcaggatccaggaagcccccaaattgacccatttgtgattaagaagtaatacccatttctgactacagagggcgctcagcccgaccatcacctcgggggaacaataaaacatttccacttgatctatttttcttaaacatttttttaaacctatagagatgttacagaatctttttttttttttttgttgcactgtagtatcgaaacatgattcagtcaacacagggggaaagacctgttattatagggcgtaatatagctgcaattatggacctttttatgatctcaaaaatatcaccagagttgagagtccatgtcagtgtatactgtgtaattatagataatgtgtcagactaaaaacgcccactggggtcacctgatgggtttctagcttgatccaggggccagcctttgtttttttttttttaatcgtggttccaatatctttagtttgtagaagcaagaaaaatacaggtaataacgattttatttcatttgcgatctggtgtaactggctttcccatgagtttttatttttttagtcgtagcatcctaggccttaagatcaaagaacgaaggaagatgtaactacctagataaatgccactgtgcgactttgctgtgagatcaggtataggattcctaaaaaaaaaaagtacaattctcacagcccttaacaggatggacttgaattaaaaaaaaaaaaaaaaaa

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