LOCUS       NM_001008168            2163 bp    mRNA    linear   VRT 04-FEB-2024
DEFINITION  Xenopus tropicalis required for meiotic nuclear division 5 homolog
            A (rmnd5a), mRNA.
ACCESSION   NM_001008168
VERSION     NM_001008168.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082487.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082487.1, CR855626.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /map="1"
     gene            1..2163
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /note="required for meiotic nuclear division 5 homolog A"
                     /db_xref="GeneID:493531"
                     /db_xref="Xenbase:XB-GENE-5741891"
     exon            1..404
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    11..13
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /note="upstream in-frame stop codon"
     CDS             263..1438
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /EC_number="2.3.2.27"
                     /note="protein RMD5 homolog A"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RMND5A"
                     /protein_id="NP_001008169.1"
                     /db_xref="GeneID:493531"
                     /db_xref="Xenbase:XB-GENE-5741891"
                     /translation="

MDQCGTVERELEKVLHKFGGYGQHCERSLEELMEYAGGLRREILQAAEQDGELSGTLSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDADISSVGIDGCWQNDSQQILSEVMVEHFFRQGMLDVAEELCQEAGLSIDASQKEPFVELNRILEALKVRVLRPALEWAVSNREMLMAQNSSLEFKLHRLYFISLLMGGTVNQREALQYAKNFQPFAENHQKDIQVLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF"

     misc_feature    440..1435
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]; Region:
                     COG5109"
                     /db_xref="CDD:227440"
     misc_feature    719..1153
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /note="CTLH/CRA C-terminal to LisH motif domain; Region:
                     CTLH; pfam10607"
                     /db_xref="CDD:402305"
     exon            405..547
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            548..682
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            683..783
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            784..950
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1116
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1219
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1374
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
     exon            1375..2139
                     /gene="rmnd5a"
                     /gene_synonym="ctlh; p44ctlh; rmd5; rmnd5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctagcggcggtgagcgggagttcggagagtgtatgcggctgcaccgaaccggcgacgagagcctccgcccgagaggaggaaagcgaagagcggccggtcccggaggcgcagagagcgagtaaaagacggggccgtgaggcccggggccggggagctgttactgttactgtccgaggaagaggaggctgcggagctcccccgccccgttacaccgggccccgctccctcctcctcctacccttcctccttctcctcaggggccatggatcagtgcggcacggtggagagggagctggagaaggtgctgcacaagttcggggggtacgggcagcactgtgagcgcagcctagaggagctcatggaatatgccgggggcctgaggagagagatactgcaggctgccgaacaagatggcgagttatctgggacgttatctctcgtgctgacgcagtgctgcaaacggataaaagatactgttcagaaactggcatctgatcataaagacattcacagcagcgtgtcgagagtggggaaagccattgataagaattttgatgctgacattagcagtgtggggatagatggctgttggcaaaatgacagccagcaaattctcagtgaggtgatggtggagcatttcttcagacaaggaatgctggacgtggccgaggaactttgtcaggaagccggcctttctatagatgcaagccaaaaagagccctttgttgaattaaacagaatattagaggctttaaaggtccgagtacttcggccagctctagagtgggctgtatccaacagagagatgctcatggctcagaacagctctttggaattcaaactgcacaggttatattttattagcttattgatgggaggaacagtcaaccagcgggaagcactgcagtatgccaaaaactttcagccttttgcagaaaaccatcagaaagatattcaggtccttatgggaagtcttgtgtacctacggcagggcatcgagaactctccgtatgttcatcttctagatgcaaaccagtgggcagacatttgtgacatctttactcgtgatgcttgtgccctgcttggtctctctgtggaatcacctctcagtgttagcttttccgcaggatgtgttgcactccctgccctcattaacatcaaggcagtaatagaacaaaggcagtgcacaggggtgtggaaccagaaagacgaattacctattgaagtggaccttgggaagaaatgctggtaccattcgatatttgcttgccctatccttcgccagcaaaccacagataacaatcctcctatgaaacttgtttgtgggcacattatatccagagatgcgctgaataaaatgttcaatggcagcaaattaaaatgtccatattgtcctatggagcaaagtccgggagacgccaagcagatctttttctaaagaatttgattcgttctggaatttgatggactcgtgtttagtatgatatccctggcgtgcttgaagaatccccggggaatgctccttattctctctgtacagaaggccaacatcactatttaactgttctaggtggtttcaaggagatcccatcagcgctgggggaaactcacagctttgccctattccaaggctgcgacttttcttctcattctgtaatctctctctgtgaatctgacccgggcgcagcaccagcagtggtcaaaatgcaggtttcttttgtaaaagatgtgactttttattgctgaatcctagaaacgacctttcctgtacttattcctctctttccctcgttatctaattgagaattgtcaatatagagagatgttgtgagtaatattcccctgtatgttgtatataactataaaacaaatactacagaaagtatcataaagataatagtggctatagaagagaagtgacttgtatttttttgcctaagacaaatggctgaattatccggagttttcattcagaggtttcttttttcttgctgtacttaacacaaaaaaataattgtaaataaataaacctactgacaaatgtaaaggagcgaaagggactgtttgctgaaaatatgttttaaatattaagaaatgtttgtgtgaccagaatattcaataaaaaaaaattctaccataaaaaaaaaaaaaaaaaaaaaaaaa

//