LOCUS       NM_001001190            2253 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Xenopus tropicalis transmembrane protein 178, gene 2 (tmem178.2),
            mRNA.
ACCESSION   NM_001001190
VERSION     NM_001001190.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Hellsten,U., Harland,R.M., Gilchrist,M.J., Hendrix,D., Jurka,J.,
            Kapitonov,V., Ovcharenko,I., Putnam,N.H., Shu,S., Taher,L.,
            Blitz,I.L., Blumberg,B., Dichmann,D.S., Dubchak,I., Amaya,E.,
            Detter,J.C., Fletcher,R., Gerhard,D.S., Goodstein,D., Graves,T.,
            Grigoriev,I.V., Grimwood,J., Kawashima,T., Lindquist,E.,
            Lucas,S.M., Mead,P.E., Mitros,T., Ogino,H., Ohta,Y., Poliakov,A.V.,
            Pollet,N., Robert,J., Salamov,A., Sater,A.K., Schmutz,J., Terry,A.,
            Vize,P.D., Warren,W.C., Wells,D., Wills,A., Wilson,R.K.,
            Zimmerman,L.B., Zorn,A.M., Grainger,R., Grammer,T., Khokha,M.K.,
            Richardson,P.M. and Rokhsar,D.S.
  TITLE     The genome of the Western clawed frog Xenopus tropicalis
  JOURNAL   Science 328 (5978), 633-636 (2010)
   PUBMED   20431018
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC067318.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC067318.1, CR926218.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="4"
                     /map="4"
     gene            1..2253
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="transmembrane protein 178, gene 2"
                     /db_xref="GeneID:407851"
                     /db_xref="Xenbase:XB-GENE-5809007"
     exon            1..562
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..1059
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="Transmembrane protein 178B"
                     /codon_start=1
                     /product="transmembrane protein 178B precursor"
                     /protein_id="NP_001001190.1"
                     /db_xref="GeneID:407851"
                     /db_xref="Xenbase:XB-GENE-5809007"
                     /translation="

MRLLAGAGLCLALAALALLAVALSTDHWYETDARRHRDRCRKPGGKRNDPGYMYTPGQHLPLRGEPPSSRIRSPRGGEPGGVRMISRAEDLGVRGLRERPTGARDLPLSRPYLATDPHCSRRFNSTVSGLWRKCHRDGFDKDTEELILKGIVERCTSVRYYYTSSSLPPNLSVNVTKTIRQDEWHALHLRRMTAGFIGMAVSIILFGWMVGVLGCCKQHDLMQYVAGLLFLMGGTCCIISLCTCVAGINFELSRYPRSIYSLPEEISHGYGWSMFCAWGGLGLTLLSGFLCTLAPSLSASQSAVHKPRQENGAV"

     sig_peptide     115..186
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
     mat_peptide     187..1056
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /product="Transmembrane protein 178B. /id=PRO_0000419263"
                     /note="propagated from UniProtKB/Swiss-Prot (F6V1J6.2)"
     misc_feature    208..363
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="propagated from UniProtKB/Swiss-Prot (F6V1J6.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    496..948
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     misc_feature    694..756
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="propagated from UniProtKB/Swiss-Prot (F6V1J6.2);
                     transmembrane region"
     misc_feature    796..858
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="propagated from UniProtKB/Swiss-Prot (F6V1J6.2);
                     transmembrane region"
     misc_feature    934..996
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /note="propagated from UniProtKB/Swiss-Prot (F6V1J6.2);
                     transmembrane region"
     exon            563..676
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /inference="alignment:Splign:2.1.0"
     exon            677..814
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /inference="alignment:Splign:2.1.0"
     exon            815..2168
                     /gene="tmem178.2"
                     /gene_synonym="tmem178b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cccagcgcagcagcagcaccacctctgcttaggcccctcccggccgcaccgccgcaccgcagccagcagggggagccacctctccggttatcagtcagccctctctccggcgctatgaggctgctggccggtgccggtctgtgcttggccctggccgctcttgccctactagccgtggcgctaagcaccgatcactggtacgagacggacgcccggaggcaccgggaccgctgcaggaagccgggggggaaacggaacgatcccggctacatgtacaccccgggccaacacctgcctctccgcggggagccccccagcagccggatccggagccctaggggcggggagccggggggagtccgtatgatttccagggcagaggatttgggggtcagggggctccgggagcgtcccaccggggcccgggacttacctctctcccgaccctatttggccaccgacccccattgcagccgccgcttcaattccaccgtatccggactgtggaggaaatgtcaccgggatggattcgataaagacaccgaggagcttatcctgaaaggaatcgttgagcgctgcacttcagtacggtattattacacatcgtcctccctgccacccaacttgtccgtcaacgtcaccaagaccatccgccaagatgaatggcacgcactgcatctgcgcagaatgacagctggcttcataggcatggcggtctccattattctgtttgggtggatggtcggagtgctgggctgttgcaagcagcatgatctcatgcaatatgtggccgggctgctattcctcatgggagggacctgctgtattatatccctctgtacctgcgtggctggaatcaacttcgagctgtcccggtacccgcgctcaatatactctctgccggaggagatcagtcacggttatggctggtctatgttttgcgcatggggcgggctgggactcacccttctgtctggatttctctgcactttggctccatccctcagtgcatcacaatcagccgtccataaaccacggcaggagaatggggccgtctgacatggagcgggggggctggactaaaacatatgactcgggggcatttctaggcctcaacaggaagttgttctgttcaacttgtttgtttggtctgaccatgtggttgcttgtgaaaagtgcagaagtccgaacttcgtgtttatagaatggaattgcgcaaagggaatttttttttgtttttgttttttctgcgaggccaaaattccatcagtgccgcagcgatgaggcaaggaggaccttcaatggtgctgttgactcctgggaagagaatcctatacagctgtgtgatttagacgttttagtctcttcgtcgatagcaatctcctttggcttctacactccttcttcagagacgctcgggggtgtaggactggtgccagtcgctggctacgggatcagtatttgggacttttgtatacatgaccggttattgctttttacatgttttaatacactccaaaaaacaaaaaaagaaaaaaaaagccttacccaactgaatatgttttcctgtctgaggaaggaactgtctatgccccctgcagttgttaccgtcagacccaagggaaccctcctgcagtgcctttaagtaggcaggagaagcctacgcaagctcaggctgagatcctacaggggcaacatggcgacaaggcaataaggcacacagggttagtccttcctccgcgcaaggcaggcgtgacttaaaaatcacaaaggacacgggaatgggtggaagacgggaactcggggtgcttgggtaaattattgtttgtggtccatcaccattatggaaagaaaaaaaaaagcacatagacaaacaggtttgtgtcatcactgcaagctgcccatttattttgttttaataatatgaattctatgtagatctgtctggtgctagccaggaatgatcagaaggcagtcattccaaaacaaacccaaggttaccaaactgtctgcagtgctgtggttttttttttttgggcatacaatgattcttttgggtccaccatattttttttttattacagaacctgtagatataaagctattatgtacatgatctaatataataaaaagacctaaggcctataagtccttgtcctgctccaaaaaaaaaaaaaaaaaaaacaataaactataaggtacataaaaaccaaaaaaaatagaagaataaaagaaagaaaaaaaaaaaaaaaa

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