GGRNA | Results

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PREDICTED: Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, mRNA. (3654 bp)

LOCUS XM_031890601 3654 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X2, mRNA. ACCESSION XM_031890601 VERSION XM_031890601.1 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This...

Synonym: c14orf102
XM_031890601.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X1, mRNA. (4089 bp)

LOCUS XM_031890600 4089 bp mRNA linear VRT 18-DEC-2019 DEFINITION PREDICTED: Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), transcript variant X1, mRNA. ACCESSION XM_031890600 VERSION XM_031890600.1 DBLINK BioProject: PRJNA205740 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This...

Synonym: c14orf102
XM_031890600.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. (3601 bp)

LOCUS NM_001079399 3601 bp mRNA linear VRT 23-DEC-2019 DEFINITION Xenopus tropicalis NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION NM_001079399 VERSION NM_001079399.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC123943.1. ##...

Synonym: c14orf102
NM_001079399.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X8, mRNA. (6515 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 718..1080 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(874..876,919..921,961..963,973..975,1027..1029, 1048..1050,1054..1056) /gene="ago4" /note="nucleic acid-binding interface [...

XM_004911574.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X7, mRNA. (6521 bp)

XM_012957371.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X6, mRNA. (6527 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 724..1086 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(880..882,925..927,967..969,979..981,1033..1035, 1054..1056,1060..1062) /gene="ago4" /note="nucleic acid-binding interface [...

XM_012957370.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X2, mRNA. (5898 bp)

ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1627..1989 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1783..1785,1828..1830,1870..1872,1882..1884, 1936..1938,1957..1959,1963..1965) /gene="ago3" /note="nucleic acid-binding interface [...

XM_002936224.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 3, RISC catalytic component (ago3), transcript variant X1, mRNA. (5902 bp)

ago3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1628..1990 /gene="ago3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1784..1786,1829..1831,1871..1873,1883..1885, 1937..1939,1958..1960,1964..1966) /gene="ago3" /note="nucleic acid-binding interface [...

XM_004911571.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X4, mRNA. (6587 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 790..1152 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(946..948,991..993,1033..1035,1045..1047,1099..1101, 1120..1122,1126..1128) /gene="ago4" /note="nucleic acid-binding interface [...

XM_002938838.5 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X3, mRNA. (6594 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 791..1153 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(947..949,992..994,1034..1036,1046..1048,1100..1102, 1121..1123,1127..1129) /gene="ago4" /note="nucleic acid-binding interface [...

XM_012957367.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X2, mRNA. (6600 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 803..1165 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(959..961,1004..1006,1046..1048,1058..1060, 1112..1114,1133..1135,1139..1141) /gene="ago4" /note="nucleic acid-binding interface [...

XM_004911573.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 4, RISC catalytic component (ago4), transcript variant X1, mRNA. (6607 bp)

gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 804..1166 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(960..962,1005..1007,1047..1049,1059..1061, 1113..1115,1134..1136,1140..1142) /gene="ago4" /note="nucleic acid-binding interface [...

XM_004911572.4 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), transcript variant X1, mRNA. (5660 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 995..1357 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1151..1153,1196..1198,1238..1240,1250..1252, 1304..1306,1325..1327,1331..1333) /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note...

Synonym: Argonaute2; eif2c2
XM_012964517.3 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis argonaute 1, RISC catalytic component (ago1), mRNA. (7044 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 785..1147 /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(941..943,986..988,1028..1030,1040..1042,1094..1096, 1115..1117,1121..1123) /gene="ago1" /gene_synonym="eif2c; eif2c1; gerp95" /...

Synonym: eif2c; eif2c1; gerp95
NM_001317215.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis argonaute 2, RISC catalytic component (ago2), mRNA. (3687 bp)

domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 926..1288 /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1082..1084,1127..1129,1169..1171,1181..1183, 1235..1237,1256..1258,1262..1264) /gene="ago2" /gene_synonym="Argonaute2; eif2c2" /note...

Synonym: Argonaute2; eif2c2
NM_001004877.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis dicer 1, ribonuclease III (dicer1), transcript variant X2, mRNA. (6344 bp)

gene_synonym="dcr1; dicer; herna" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2904..3272 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

Synonym: dcr1; dicer; herna
XM_031890235.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

PREDICTED: Xenopus tropicalis dicer 1, ribonuclease III (dicer1), transcript variant X1, mRNA. (12229 bp)

gene_synonym="dcr1; dicer; herna" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2990..3358 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

Synonym: dcr1; dicer; herna
XM_031890234.1 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Xenopus tropicalis dicer 1, ribonuclease III (dicer1), mRNA. (5682 bp)

herna" /note="propagated from UniProtKB/Swiss-Prot (B3DLA6.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 2629..3006 /gene="dicer1" /gene_synonym="dcr1; dicer; herna" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order...

Synonym: dcr1; dicer; herna
NM_001129918.2 - Xenopus tropicalis (tropical clawed frog) - NCBI - UCSC - Xenbase

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Xenopus tropicalis (tropical clawed frog)?to=0&format=json
0.118 | 0.043 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Xenopus tropicalis (tropical clawed frog)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.120 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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