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2024-04-19 06:29:19, GGRNA : RefSeq release 60 (20130726)
LOCUS XM_003960850 1263 bp mRNA linear PRI 30-OCT-2012 DEFINITION PREDICTED: Homo sapiens double homeobox 4 like 4 (DUX4L4), mRNA. ACCESSION XM_003960850 VERSION XM_003960850.1 GI:410173879 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004080013) annotated using gene prediction method: GNOMON. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1263 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="Unknown" /cell_line="CHM1htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..1263 /gene="DUX4L4" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:441056" /db_xref="HGNC:38686" CDS 1..1263 /gene="DUX4L4" /codon_start=1 /transl_except=(pos:280..282,aa:OTHER) /transl_except=(pos:454..456,aa:OTHER) /transl_except=(pos:706..708,aa:OTHER) /transl_except=(pos:952..954,aa:OTHER) /transl_except=(pos:1102..1104,aa:OTHER) /product="LOW QUALITY PROTEIN: double homeobox 4 like 4" /protein_id="XP_003960899.1" /db_xref="GI:410173880" /db_xref="GeneID:441056" /db_xref="HGNC:38686" /translation="
MKQWSVPVCRPLXKSHWLAVRAGFLAAPATVHMLAEVHGSPLASLCXCPSMKFWLGIPAMALLTPLEGTFPAEARGWRRRRRLVWTLSQSEALXAYFERNPYPGIATREMLVKAIGIPEPRIQIWFQNERSPQLRQHWRESRPWPXRHGRQXGRRKQTAVTRSQNSLLLRAIEKDRFPGIATREELARETGLLESRIQIWFQNRRARKPVQGGRANMEAIGLCKATPGGCHPVPTXVAFAQTGAWGSGLPTAHVPCAPGALPQGAFVSQGVRAVPVLQPSEAAPAEGISQPGPAHGDFAYAALALSEGALSDPQSPRXPPQMGKSQKDRAPQRDSLPGPCVVGQPGTTQEGPQGQGVLAQPASQRITXWGWGRGPQVAGVAWEPEAGAATPGQPAPSTWQGKMQGILADVRDSRTGVEWN
"
misc_feature 250..411
/gene="DUX4L4"
/note="Homeodomain; DNA binding domains involved in the
transcriptional regulation of key eukaryotic developmental
processes; may bind to DNA as monomers or as homo- and/or
heterodimers, in a sequence-specific manner; Region:
homeodomain; cd00086"
/db_xref="CDD:28970"
misc_feature order(250..252,370..372,379..384,391..393)
/gene="DUX4L4"
/note="specific DNA base contacts [nucleotide binding];
other site"
/db_xref="CDD:28970"
misc_feature order(253..255,304..306,322..324,361..363,367..372,
379..384,388..396,400..405)
/gene="DUX4L4"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28970"
misc_feature 466..621
/gene="DUX4L4"
/note="Homeodomain; DNA binding domains involved in the
transcriptional regulation of key eukaryotic developmental
processes; may bind to DNA as monomers or as homo- and/or
heterodimers, in a sequence-specific manner; Region:
homeodomain; cd00086"
/db_xref="CDD:28970"
misc_feature order(466..474,478..480,529..531,547..549,586..588,
592..597,604..609,613..621)
/gene="DUX4L4"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28970"
misc_feature order(466..468,475..477,595..597,604..609,616..618)
/gene="DUX4L4"
/note="specific DNA base contacts [nucleotide binding];
other site"
/db_xref="CDD:28970"
variation 99
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:372538811"
variation 159
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:377571437"
variation 258
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:192034245"
variation 265
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:181644038"
variation 353
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:199875395"
variation 394
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:201176248"
variation 485
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:202126523"
variation 770
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371128388"
variation 848
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:374300878"
variation 862
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:377664900"
variation 894
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370872228"
variation 914
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:375389164"
variation 921
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:368001385"
variation 949
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370569001"
variation 965
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373672614"
variation 977
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:367563801"
variation 985
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:372231463"
variation 998
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374471230"
variation 1010
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:368371772"
variation 1017
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371877388"
variation 1023
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:376224108"
variation 1056
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:369280901"
variation 1077
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:371910220"
variation 1097
/gene="DUX4L4"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:74554690"
variation 1106
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:199891345"
variation 1109
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:200997204"
variation 1110
/gene="DUX4L4"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:79557605"
variation 1113
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:77750740"
variation 1115
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:201426413"
variation 1116
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:202166276"
variation 1120
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:74372639"
variation 1124
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:200466727"
variation 1126
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:201390942"
variation 1131
/gene="DUX4L4"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:199597415"
variation 1140
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75415706"
variation 1142
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:200506495"
variation 1143
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:200991186"
variation 1145
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:201445448"
variation 1146
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75825492"
variation 1157
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:200921186"
variation 1158
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:76157822"
variation 1167
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:72499998"
variation 1178
/gene="DUX4L4"
/replace="a"
/replace="t"
/db_xref="dbSNP:74328744"
variation 1179
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:199879627"
variation 1180
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:78088357"
variation 1183
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75108513"
variation 1184
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:78443540"
variation 1185
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:79196034"
variation 1188
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:75800627"
variation 1191
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:74688914"
variation 1195
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:77310966"
variation 1220
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:374952787"
ORIGIN
atgaagcagtggagtgtgcctgtctgcaggcctttanntaagagccactggctggctgtccgggcaggcttcctggctgcacctgccacagtgcacatgctggctgaggtgcacgggagcccgctggcttctctctgcntgtgtccgtccatgaaattctggctggggatccccgcgatggccctcctgacacctttggagggcacattccccgcggaagcccggggatggagacggagaaggagactggtttggaccctgagccaaagcgaggccctgtgagcctactttgagcggaacccatacccgggcattgccaccagagaaatgctggtgaaggccatcggcattccagagcccagaatccagatttggtttcagaatgagaggtcaccccagctgaggcagcactggcgggaatctcggccctggcccnagagacacggccggcaataaggcaggcgaaagcagaccgctgtcaccagatcccagaactccctgctcctccgagccattgagaaggatcgctttccaggtatcgccaccagggaagagctggccagggagacgggcctcctggagtccagaattcagatctggtttcagaatcgaagggccaggaaaccggtacagggtggcagggcgaacatggaggcaatcggcctgtgcaaagcgacacctggcgggtgtcaccctgttcccacataggtcgccttcgcccaaaccggcgcatggggatcgggtcttcccacagcccacgtgccatgtgcgcctggggctctcccacagggggcttttgtgagccagggagtgagggccgtccccgtgctccagcccagcgaggccgcgccagccgaggggatctcccaacctggcccggcacatggggattttgcctatgctgccctggcactttcggaaggggcgctctctgaccctcagtctcctcgctgacctcctcaaatgggcaaaagccagaaggaccgggccccgcagcgcgacagcctgccaggcccttgtgtggtgggacagcctgggaccactcaagaagggccacagggccaaggtgtgcttgcacaacccgcgtcccagaggattacttagtggggttggggccggggtccacaggtcgccggggtggcatgggaacccgaagctggggcagctacaccaggccagcctgccccctccacgtggcaggggaagatgcaaggcatcctggcggatgtacgggacagcagaaccggagtggaatggaactga
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:441056 -> Molecular function: GO:0000976 [transcription regulatory region sequence-specific DNA binding] evidence: IEA
GeneID:441056 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
GeneID:441056 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
GeneID:441056 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
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