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2024-03-29 23:11:04, GGRNA : RefSeq release 60 (20130726)

LOCUS       NR_036652               1167 bp    RNA     linear   PRI 16-JUL-2013
DEFINITION  Homo sapiens elongation factor Tu GTP binding domain containing 1
            pseudogene 1 (EFTUD1P1), non-coding RNA.
ACCESSION   NR_036652 XM_001713991 XM_001714858 XM_001714913 XM_001714916
            XM_002343381 XM_002347554
VERSION     NR_036652.1  GI:307938356
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
            Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
            Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
            Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
            Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
            Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
  TITLE     Diversification of transcriptional modulation: large-scale
            identification and characterization of putative alternative
            promoters of human genes
  JOURNAL   Genome Res. 16 (1), 55-65 (2006)
   PUBMED   16344560
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB064528.1, DY655563.1 and AC103965.5.
            On or before Oct 2, 2010 this sequence version replaced
            gi:239745281, gi:239745283, gi:239756372, gi:239756374,
            gi:239750894, gi:239750896.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments of the
            functional gene.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support ERS025081, ERS025082
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-565               DB064528.1         1-565
            566-966             DY655563.1         62-462
            967-1027            AC103965.5         41829-41889         c
            1028-1167           AC103965.5         36897-37036         c
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /map="15q25.2"
     gene            1..1167
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /note="elongation factor Tu GTP binding domain containing
                     1 pseudogene 1"
                     /pseudo
                     /db_xref="GeneID:648809"
                     /db_xref="HGNC:31739"
     misc_RNA        1..1167
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /product="elongation factor Tu GTP binding domain
                     containing 1 pseudogene 1"
                     /pseudo
                     /db_xref="GeneID:648809"
                     /db_xref="HGNC:31739"
     exon            1..140
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       23
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:79590814"
     variation       78
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145691773"
     exon            141..240
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       189
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200382037"
     exon            241..308
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       249
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:368647874"
     exon            309..393
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       345
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:185681047"
     variation       356
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:140114591"
     variation       357
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:190637865"
     variation       371
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:183490305"
     exon            394..527
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       419
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:74026652"
     variation       430
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:181501805"
     variation       465
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:74026653"
     exon            528..608
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       565
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371682321"
     variation       566
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:11638297"
     variation       576
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:74026659"
     exon            609..708
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       652
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2659141"
     variation       669
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:7176688"
     exon            709..860
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       740
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150426652"
     variation       784
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201717391"
     variation       831
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:374428768"
     exon            861..1027
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       865
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:61738831"
     variation       866
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="a"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:61738832"
     variation       892
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2659152"
     variation       930
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2659153"
     exon            1028..1167
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       1116
                     /gene="EFTUD1P1"
                     /gene_synonym="FAM42B; HsT19321"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374949278"
ORIGIN      


gactcggcgccggcttccggcgccgtaagagaagcgtccgcgcgggcgttctggacccgcagagttctcggcgtttccgaagctcttggtgtggccgggacccgggagaaggagcagggctggtggggctgctgcagccggaaataatcatggtgctcaacagtttggataagatgattcaactccagaaaaacactgccaacatcaggaatatttgtgttttggctcatgttgaccgtggaaaaactactctggctgactgtcttatatctagcaatggaatcatctccagccacctagcaggcaagttaaggtacatggacagcagagaagatgaacagatccgagggatcactatgaaatccagtgccatttccctacattatgcaacaggtaatgaggagtacctgattaatctgatagactctccaggacacatggacttttcctcagacgtatcaaccgctgttcgcatttgtgatggatgcatcattgtggtagatgctgtggaaggagtctgtccacagcccagagaatggagagactgatgtgcacaggatcacaaacttttgactctcttccaccagaaactcaagcactgaaagcagcttttatgaaatgtggaagtgaggacactgctccagttatcatgtttgtttccaaaatgtttgcagttgatgctaaggccttgcctcagaataagccaaggcctctcactcaagaagaaattgctcagagacgtgagcgtgcaagacaaaggcatgcagagaagcttgcagcagcgcagggacaggcacccttggagcccacccaagatgggagtgccattgaaacatgtccaaaaggagaggagccaagaggtgacgagcaacaggtggaaagtatgacccccaaacctgtgctccaggaagaaaacaaccaagagtcttctattgcatttgctcgggtgttcagtggtgtggctcgaagaggaaagaaaatttttgtcttggggcccaaatacagtcctcttgagtttttacgaagggtaccattaggcttctcagctccaccagatggcctcccccaagtcccccacatggcatactgtgctctggaaaacctgtatcttctgatgggaagggaactggaatatctagaggaggtacctccaggaaatgtgctagg
//

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