LOCUS       NR_001559               2716 bp    RNA     linear   PRI 16-JUL-2013
DEFINITION  Homo sapiens VENT homeobox pseudogene 1 (VENTXP1), non-coding RNA.
ACCESSION   NR_001559 XR_000176
VERSION     NR_001559.2  GI:216547912
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2716)
  AUTHORS   Luykx,J.J., Bakker,S.C., Lentjes,E., Neeleman,M., Strengman,E.,
            Mentink,L., Deyoung,J., de Jong,S., Sul,J.H., Eskin,E., van
            Eijk,K., van Setten,J., Buizer-Voskamp,J.E., Cantor,R.M., Lu,A.,
            van Amerongen,M., van Dongen,E.P., Keijzers,P., Kappen,T.,
            Borgdorff,P., Bruins,P., Derks,E.M., Kahn,R.S. and Ophoff,R.A.
  TITLE     Genome-wide association study of monoamine metabolite levels in
            human cerebrospinal fluid
  JOURNAL   Mol. Psychiatry (2013) In press
   PUBMED   23319000
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2716)
  AUTHORS   Moretti,P.A., Davidson,A.J., Baker,E., Lilley,B., Zon,L.I. and
            D'Andrea,R.J.
  TITLE     Molecular cloning of a human Vent-like homeobox gene
  JOURNAL   Genomics 76 (1-3), 21-29 (2001)
   PUBMED   11549314
REFERENCE   3  (bases 1 to 2716)
  AUTHORS   Moreau-Aubry,A., Le Guiner,S., Labarriere,N., Gesnel,M.C.,
            Jotereau,F. and Breathnach,R.
  TITLE     A processed pseudogene codes for a new antigen recognized by a
            CD8(+) T cell clone on melanoma
  JOURNAL   J. Exp. Med. 191 (9), 1617-1624 (2000)
   PUBMED   10790436
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC079178.20.
            On Dec 9, 2008 this sequence version replaced gi:33354245.
            
            Summary: Homeobox genes encode DNA-binding proteins, many of which
            are thought to be involved in early embryonic development. Homeobox
            genes encode a DNA-binding domain of 60 to 63 amino acids referred
            to as the homeodomain. This pseudogene is a member of the Vent
            homeobox gene family. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript was derived from genomic
            sequence to make the sequence consistent with the reference genome
            assembly. The genomic coordinates used for the transcript record
            were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AF164963.1 [ECO:0000345]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2716              AC079178.20        20774-23489         c
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="X"
                     /map="Xp21.3"
     gene            1..2716
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /note="VENT homeobox pseudogene 1"
                     /pseudo
                     /db_xref="GeneID:139538"
                     /db_xref="HGNC:30900"
     misc_RNA        1..2716
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /product="VENT homeobox pseudogene 1"
                     /pseudo
                     /db_xref="GeneID:139538"
                     /db_xref="HGNC:30900"
     exon            1..2716
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       27
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:5944523"
     variation       194
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187248331"
     variation       371
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146931150"
     variation       418
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:189657227"
     variation       637
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:182331246"
     variation       720
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:5944524"
     variation       811
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:5944525"
     variation       817
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:6628199"
     variation       830
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:147179251"
     variation       896
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:189013667"
     variation       964
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:193146173"
     variation       1227
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:185185084"
     variation       1235
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:188507913"
     variation       1290
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:12863706"
     variation       1292
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:12861711"
     variation       1331
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:5944526"
     variation       1344
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:193168396"
     variation       1385
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:72623098"
     variation       1447
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:183886118"
     variation       1513
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:150684784"
     variation       1579
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:16997824"
     variation       1593
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:116086415"
     variation       1714
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375543842"
     variation       1860
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:369718673"
     variation       1869
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:146790118"
     variation       2368
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:188565400"
     variation       2484
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:180712498"
     variation       2494
                     /gene="VENTXP1"
                     /gene_synonym="CT18; NA88A; VENTX2P1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139560246"
ORIGIN      

gcctctgactccatgcctcccacacacgcggtctgtgcagctaacaccaggcgcctacccggaggactcagctgttctgtttacatcgtggcggcacctctcaccctgacccacgcaaaggttctggagatttctggagaatatatttattaaagccacctcttcactgaaagttaccaaaagggtcagtttaggaagtaaatgaagggtcagtgaacagagtcaaacgcagaagtgggcttgttatgggtagggctttcagcatatgataaaaggatatttgttttttaaagtgttggaaaaactggttttctacttggaaaaagtaaaggttgtaagctttgtgtgtaaaaaagaaaaccatgaaggattggaagggaatgcaggtgtcgtgtttataaccttgtggttcgagtccctcttaacaaggactccaaagctggaaagcaggagggaacaaaggtgaaaattaaggcggggatgctcgggccctgcagtgcgctctaggctgtgcttgagccgggactgtgcccgcagcctgctaagggctgctttctcgggccagggaaagcggggcagcgggggacctgcggctgtgcctggactgaagccgtcccgcatgtccccaccctccagcatgtgttcacctgtccccctcctcgcagcagcctcaggacaaaacagaatgactcaaggacagcacttcctgcagaaagtctagaagtgcccagaatgggaggcacggaagcccctcccagggaggactctccctcattgacggaccattcttggtgcagattcctgactgcacgcaccgaaccgtagacaagcgggcatccatccatgttgccccagagtgcccaggaggcaggcagcgcggggcgcccagacagacgggttcagcctgcaggactgcgaggcgacctgtgaaaccgacccaggcatcccaacaagaacaaaagcgtggtcctgtggccgtgtccacagcaagttccactttcaccttgctcatttctgcattgttggaagtgtttacaaccagcatgtgctttcataatacaacctcaggtaagaaaggaaaaaaattatagttgtatcatacctcaaatacgtttttaagttctacaatttaagctactctagaatagttagaatagttagaaaatggaaattttgcttaatggtgtttctaatatgaagggtacaagaattgtggtaggctctaactgttggcattaatggcatttttcttcatagaaacatgcaaaaaacaaccagtgttagatttctagaatgatcagacctatgcatatgtacttaattgtattaaccttgttgataatgttaaatggtaacatagagttaaccttagaacatttcctaacaattgatgtctttgaaacaattatttctgaggacaatacaggtaatctgcagtagctgaaagcaaattttggagtaaggtaaatttaagtttaaatcctcatgttgtcacttaaaaattatttgactgttgacaggttattaaatctctgtgtattttgtcacatgtgaagtaaggataatggaatcattttgtataagtaaaagaaaatgtcgtgtagttattcgttgctcaaaaacataccatgaatcattggaaggcagggactgtgacctactttccttttcatcctttcatcttagaataatgtctgctaaggtacttaatgtatgctctctgaaaaatgagtgaattaatgaatcttaatgtgtctttttcatgccctcataaatatgcatgtttaaatgcaatgaatcttactacataagcattgtttggtagctaggcactcaatacacattatttctactttctcaaggcatgtagaactgaatcgtaatcaatgatcaaaccataagtattctgtatctttagtaaaggctgtgaataaagagtagcattacttgttcattcatttgaacctttattgcatgaacactttgcatcagataatataccagcaaatgtactagtgttgttgttgttttggacatttggaaatttctgtttgtcttcatgcagataaagtatcttggtagtaattatttttttcacatgaacatttgaaaacctgtagaaaaggccgataccttttgctcagagatacctaaaatatattacagggtaataaaataaatcaactagatcaataagtttggtattgttaattttaaagtaactttattttataattgacatgtgtagtttgacaaattaaatgcaataccaagcttaaaataaaaatacagtgatactgtcccatcattccccagtcttacttttctatcctgggggcaaacacttttgaatctttcagttgcttaatttggcatttatatatctccatagttttatataatatgtaaatatagctattttgatttataaatgttaattattatcaaacttcaagttttagcagaagtgtggtgatgaatcagttttaaatccatctctcctaaaaactgtagataaatatacacacatacttgtgtgcatgcacacataacacatgaagagtgcttacagttactacactgattgacttcatcttctggtaagttatagatgaactctttcatgatgccagttctatgtttttcctctttccaatgcctgctattgttatgaaaattttggttaaatcgatattgaataaacatcatgcattca

//