2024-04-24 22:29:53, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_152353 990 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens claudin domain containing 2 (CLDND2), mRNA. ACCESSION NM_152353 VERSION NM_152353.2 GI:160420329 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 990) AUTHORS Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H., Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M., Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S., Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F., Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J., Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K., Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T., Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B., Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E., Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L., Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M., Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A., Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N., Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L., Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S., Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E., Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S., Makowski,K.A., Bosak,S. and Malek,J. CONSRTM MGC Project Team TITLE The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC) JOURNAL Genome Res. 14 (10B), 2121-2127 (2004) PUBMED 15489334 REMARK Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to Morin, Ryan]] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC008750.9 and BC029518.1. On Nov 17, 2007 this sequence version replaced gi:22748764. ##Evidence-Data-START## Transcript exon combination :: BC029518.1, CV024668.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025085 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-348 AC008750.9 41606-41953 c 349-990 BC029518.1 349-990 FEATURES Location/Qualifiers source 1..990 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="19" /map="19q13.41" gene 1..990 /gene="CLDND2" /note="claudin domain containing 2" /db_xref="GeneID:125875" /db_xref="HGNC:28511" /db_xref="HPRD:14574" exon 1..595 /gene="CLDND2" /inference="alignment:Splign:1.39.8" misc_feature 172..174 /gene="CLDND2" /note="upstream in-frame stop codon" CDS 427..930 /gene="CLDND2" /codon_start=1 /product="claudin domain-containing protein 2" /protein_id="NP_689566.1" /db_xref="GI:22748765" /db_xref="CCDS:CCDS12829.1" /db_xref="GeneID:125875" /db_xref="HGNC:28511" /db_xref="HPRD:14574" /translation="
MGVKRSLQSGGILLSLVANVLMVLSTATNYWTRQQEGHSGLWQECNHGICSSIPCQTTLAVTVACMVLAVGVGVVGMVMGLRIRCDEGESLRGQTTSAFLFLGGLLLLTALIGYTVKNAWKNNVFFSWSYFSGWLALPFSILAGFCFLLADMIMQSTDAISGFPVCL
" misc_feature 445..507 /gene="CLDND2" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8NHS1.1); transmembrane region" misc_feature 601..663 /gene="CLDND2" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8NHS1.1); transmembrane region" misc_feature 712..774 /gene="CLDND2" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8NHS1.1); transmembrane region" misc_feature 826..888 /gene="CLDND2" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8NHS1.1); transmembrane region" exon 596..736 /gene="CLDND2" /inference="alignment:Splign:1.39.8" variation 681 /gene="CLDND2" /replace="c" /replace="t" /db_xref="dbSNP:3745403" exon 737..856 /gene="CLDND2" /inference="alignment:Splign:1.39.8" exon 857..974 /gene="CLDND2" /inference="alignment:Splign:1.39.8" variation 897 /gene="CLDND2" /replace="c" /replace="t" /db_xref="dbSNP:1059344" ORIGIN
gtctctctgggctctgtgtctaaggagccctagggcactgggtgtgagtcacttaggtgggcctgtgtggaggggtgtctggggaggacattgaacaggctgggctgaaagggcgttcggctgtcgggggaggtctctgggaagacaggttcctcacagcaaagcctgtggtgaaggtctcagaggcctctcaggggaagtctcaaggtctccagtaaggggaacgaggtctggagggaggaggttgtggatcctcaggcagggttgttgagggaggggggtctccaggtccccagaagcagggacctcaggcaggagtaccaggggaggagtgtggaggaagcgggctcctcagctgggggcctcggggtaggaaaggcctgggcccatcctgcccttgtggcccccggctgcagcctcagtggcatgggggtgaagcggagcctccagagtgggggcattctgctcagcctcgtggccaacgtcctcatggtgctctccacggccaccaactactggacccgccaacaagagggccacagtggcctgtggcaggaatgcaaccacggcatctgctccagcatcccctgccagaccacgctggcggtgactgtggcgtgcatggtgctggcggtgggtgtcggcgtggtgggcatggtgatgggactgcggattcggtgcgacgagggcgagtcgctgcggggccagaccacgagcgccttcctcttcctcggcggactgctgctgctgaccgccttgataggctacaccgtgaagaatgcgtggaagaacaacgtcttcttctcttggtcctatttttctgggtggctggccttacccttctcaattctcgcgggcttctgctttctgctggcagacatgatcatgcagagcaccgacgccatcagtggattccccgtgtgtctgtgactgcagcctgcctggggcagaataaaggaacggctttttttagcaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:125875 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA
by
@meso_cacase at
DBCLS
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