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2024-04-19 23:25:58, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001207034 5722 bp mRNA linear PRI 12-MAY-2013
DEFINITION Homo sapiens ring finger protein 40, E3 ubiquitin protein ligase
(RNF40), transcript variant 3, mRNA.
ACCESSION NM_001207034
VERSION NM_001207034.1 GI:333440441
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5722)
AUTHORS Chernikova,S.B., Razorenova,O.V., Higgins,J.P., Sishc,B.J.,
Nicolau,M., Dorth,J.A., Chernikova,D.A., Kwok,S., Brooks,J.D.,
Bailey,S.M., Game,J.C. and Brown,J.M.
TITLE Deficiency in mammalian histone H2B ubiquitin ligase Bre1
(Rnf20/Rnf40) leads to replication stress and chromosomal
instability
JOURNAL Cancer Res. 72 (8), 2111-2119 (2012)
PUBMED 22354749
REMARK GeneRIF: We show that Bre1 (human BRE1A/B (RNF20/40) and mouse
Bre1a/b (Rnf20/40)) acts as an important suppressor of chromosomal
instability
REFERENCE 2 (bases 1 to 5722)
AUTHORS Jaaskelainen,T., Makkonen,H., Visakorpi,T., Kim,J., Roeder,R.G. and
Palvimo,J.J.
TITLE Histone H2B ubiquitin ligases RNF20 and RNF40 in androgen signaling
and prostate cancer cell growth
JOURNAL Mol. Cell. Endocrinol. 350 (1), 87-98 (2012)
PUBMED 22155569
REMARK GeneRIF: our results suggest that RNF20 and RNF40, either via
ubiquitylation of H2B or other targets, are coupled to the
proliferation of prostate cancer cells.
REFERENCE 3 (bases 1 to 5722)
AUTHORS Kari,V., Shchebet,A., Neumann,H. and Johnsen,S.A.
TITLE The H2B ubiquitin ligase RNF40 cooperates with SUPT16H to induce
dynamic changes in chromatin structure during DNA double-strand
break repair
JOURNAL Cell Cycle 10 (20), 3495-3504 (2011)
PUBMED 22031019
REMARK GeneRIF: RNF40 cooperates with SUPT16H to induce dynamic changes in
chromatin structure during DNA double-strand break repair.
REFERENCE 4 (bases 1 to 5722)
AUTHORS Shiloh,Y., Shema,E., Moyal,L. and Oren,M.
TITLE RNF20-RNF40: A ubiquitin-driven link between gene expression and
the DNA damage response
JOURNAL FEBS Lett. 585 (18), 2795-2802 (2011)
PUBMED 21827756
REMARK GeneRIF: Studies indicate that H2B monoubiquitylation is driven
primarily by an E3 ubiquitin ligase composed of the two RING finger
proteins RNF20 and RNF40.
Review article
REFERENCE 5 (bases 1 to 5722)
AUTHORS Chernikova,S.B., Dorth,J.A., Razorenova,O.V., Game,J.C. and
Brown,J.M.
TITLE Deficiency in Bre1 impairs homologous recombination repair and cell
cycle checkpoint response to radiation damage in mammalian cells
JOURNAL Radiat. Res. 174 (5), 558-565 (2010)
PUBMED 20738173
REMARK GeneRIF: the observed defects in the radiation response of
Bre1a/b-deficient cells
REFERENCE 6 (bases 1 to 5722)
AUTHORS Kim,J., Guermah,M., McGinty,R.K., Lee,J.S., Tang,Z., Milne,T.A.,
Shilatifard,A., Muir,T.W. and Roeder,R.G.
TITLE RAD6-Mediated transcription-coupled H2B ubiquitylation directly
stimulates H3K4 methylation in human cells
JOURNAL Cell 137 (3), 459-471 (2009)
PUBMED 19410543
REFERENCE 7 (bases 1 to 5722)
AUTHORS Zhu,B., Zheng,Y., Pham,A.D., Mandal,S.S., Erdjument-Bromage,H.,
Tempst,P. and Reinberg,D.
TITLE Monoubiquitination of human histone H2B: the factors involved and
their roles in HOX gene regulation
JOURNAL Mol. Cell 20 (4), 601-611 (2005)
PUBMED 16307923
REMARK GeneRIF: Formation of trimeric complex UbcH6 and RNF20/40 with PAF
stimulates histone 2B monoubiquitination activity in vitro
REFERENCE 8 (bases 1 to 5722)
AUTHORS Chin,L.S., Vavalle,J.P. and Li,L.
TITLE Staring, a novel E3 ubiquitin-protein ligase that targets syntaxin
1 for degradation
JOURNAL J. Biol. Chem. 277 (38), 35071-35079 (2002)
PUBMED 12121982
REMARK GeneRIF: Functional Analysis of the rat counterpart
REFERENCE 9 (bases 1 to 5722)
AUTHORS Wen,H. and Ao,S.
TITLE RBP95, a novel leucine zipper protein, binds to the retinoblastoma
protein
JOURNAL Biochem. Biophys. Res. Commun. 275 (1), 141-148 (2000)
PUBMED 10944455
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AC106886.3, AK291666.1,
AK027406.1, BC018647.2 and AI373490.1.
Summary: The protein encoded by this gene contains a RING finger, a
motif known to be involved in protein-protein and protein-DNA
interactions. This protein was reported to interact with the tumor
suppressor protein RB1. Studies of the rat counterpart suggested
that this protein may function as an E3 ubiquitin-protein ligase,
and facilitate the ubiquitination and degradation of syntaxin 1,
which is an essential component of the neurotransmitter release
machinery. Multiple alternatively spliced transcript variants
encoding different isoforms have been found for this gene.
[provided by RefSeq, May 2011].
Transcript Variant: This variant (3) lacks in-frame two consecutive
exons in the coding region, compared to variant 1. The resulting
isoform (3) lacks an internal segment, compared to isoform 1.
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments.
##Evidence-Data-START##
Transcript exon combination :: AK027406.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025081, ERS025082 [ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-711 AC106886.3 140545-141255
712-1334 AK291666.1 2-624
1335-2659 AK027406.1 625-1949
2660-4630 BC018647.2 2227-4197
4631-5312 AC106886.3 154152-154833
5313-5722 AI373490.1 1-410 c
FEATURES Location/Qualifiers
source 1..5722
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="16"
/map="16p11.2-p11.1"
gene 1..5722
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/note="ring finger protein 40, E3 ubiquitin protein
ligase"
/db_xref="GeneID:9810"
/db_xref="HGNC:16867"
/db_xref="MIM:607700"
exon 1..749
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 56
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:201918052"
variation 102
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:181301950"
variation 216
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:142652932"
variation 243
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:368063124"
variation 293
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:114846242"
variation 380
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:62057185"
variation 519
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:374039649"
variation 666..667
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="g"
/db_xref="dbSNP:141812412"
variation 667..668
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="c"
/db_xref="dbSNP:199859165"
variation 671..672
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="c"
/db_xref="dbSNP:376493317"
variation 672..673
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="t"
/db_xref="dbSNP:111298574"
variation 673
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/db_xref="dbSNP:3812999"
misc_feature 731..733
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/note="upstream in-frame stop codon"
variation 743
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:185778178"
exon 750..952
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 766
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:112478319"
variation 776
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:1550477"
variation 785
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:373061072"
variation 792
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:141744543"
CDS 821..3526
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/EC_number="6.3.2.-"
/note="isoform 3 is encoded by transcript variant 3; BRE1
E3 ubiquitin ligase homolog B; 95 kDa retinoblastoma
protein binding protein; Rb-associated protein; E3
ubiquitin-protein ligase BRE1B; BRE1-B; 95 kDa
retinoblastoma-associated protein"
/codon_start=1
/product="E3 ubiquitin-protein ligase BRE1B isoform 3"
/protein_id="NP_001193963.1"
/db_xref="GI:333440442"
/db_xref="CCDS:CCDS55994.1"
/db_xref="GeneID:9810"
/db_xref="HGNC:16867"
/db_xref="MIM:607700"
/translation="
MSGPGNKRAAGDGGSGPPEKKLSREEKTTTTLIEPIRLGGISSTEEMDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIVNRYWAQLDETVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTSELRDPLLMQLRPPLSEPALAFVVALGASSSEEVELELQGRMEFSKAAVSRVVEASDRLQRRVEELCQRVYSRGDSEPLSEAAQAHTRELGRENRRLQDLATQLQEKHHRISLEYSELQDKVTSAETKVLEMETTVEDLQWDIEKLRKREQKLNKHLAEALEQLNSGYYVSGSSSGFQGGQITLSMQKSDELGLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRHLISSLQNHNHQLKGDAQRYKRKLREVQAEIGKLRAQASGSAHSTPNLGHPEDSGVSAPAPGKEEGGPGPVSTPDNRKEMAPVPGTTTTTTSVKKEELVPSEEDFQGITPGAQGPSSRGREPEARPKRELREREGPSLGPPPVASALSRADREKAKVEETKRKESELLKGLRAELKKAQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKAKAEVDELRSRIRELEERDRRESKKIADEDALRRIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFKLMSERIKANQIHKLLREEKDELGEQVLGLKSQVDAQLLTVQKLEEKERALQGSLGGVEKELTLRSQALELNKRKAVEAAQLAEDLKVQLEHVQTRLREIQPCLAESRAAREKESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCNTRKKDAVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS
"
misc_feature 3353..3484
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/note="Zinc finger, C3HC4 type (RING finger); Region:
zf-C3HC4_2; pfam13923"
/db_xref="CDD:206094"
misc_feature 3359..3490
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/note="RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in...; Region: RING; cd00162"
/db_xref="CDD:29102"
misc_feature order(3362..3364,3368..3370,3407..3409,3413..3415,
3422..3424,3431..3433,3467..3469,3476..3478)
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/note="cross-brace motif; other site"
/db_xref="CDD:29102"
variation 866
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:369284201"
variation 895
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:147367477"
variation 907
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:140084956"
variation 925
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:376522975"
exon 953..1120
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 995
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370365187"
variation 1039
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:200779294"
variation 1041
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201672722"
variation 1106
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:200908487"
variation 1111
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:373736477"
exon 1121..1262
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1131
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:143962429"
variation 1141
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:369988056"
variation 1146
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="t"
/db_xref="dbSNP:150696859"
variation 1182
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:199734395"
variation 1186
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:139969532"
variation 1211
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:149784534"
variation 1249
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201302145"
exon 1263..1469
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1276
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:145704561"
variation 1285
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:141178194"
variation 1300
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:368256665"
variation 1309
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:368184098"
variation 1370
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:372421097"
variation 1400
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370831334"
variation 1401
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:144298537"
variation 1421
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370199075"
variation 1431
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:370463722"
variation 1434
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:200779544"
variation 1436
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:146569480"
variation 1447
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:140350331"
variation 1455
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:150302561"
variation 1462
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:142610348"
exon 1470..1591
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1494
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:373834012"
variation 1501
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:151018120"
variation 1512
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:186930335"
variation 1525
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:190164026"
variation 1577
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:146029900"
variation 1578
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:140880093"
exon 1592..1738
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1601
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:150097902"
variation 1621
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:138667885"
variation 1624
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:141073737"
variation 1678
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:146962748"
variation 1689
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:137974994"
exon 1739..1813
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1784
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:372843648"
exon 1814..1949
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 1815
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:201408415"
variation 1819
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:148540364"
variation 1838
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/db_xref="dbSNP:376887402"
variation 1845
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:146102570"
variation 1872
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370050962"
variation 1873
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:200241748"
variation 1881
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:373531132"
variation 1908
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:11556801"
exon 1950..2071
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2044
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:140066306"
variation 2070
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="t"
/db_xref="dbSNP:375382763"
exon 2072..2499
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2076
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:371336064"
variation 2079
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:375339639"
variation 2137
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:369888244"
variation 2146
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:149944221"
variation 2150
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:144994266"
variation 2151
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:145317847"
variation 2155
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201945156"
variation 2168
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:142220777"
variation 2195
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:147842419"
variation 2228
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:373535706"
variation 2270
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:181567820"
variation 2271
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:376394465"
variation 2293
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:12448366"
variation 2298
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:138041260"
variation 2324
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370636384"
variation 2339
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:372397361"
variation 2363
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:140772506"
variation 2364
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:7195142"
variation 2376
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:377015847"
variation 2402
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:200704225"
variation 2407
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:368718461"
variation 2408
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:371990879"
variation 2410
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:376313170"
variation 2419
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:11556800"
variation 2427
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:372740746"
variation 2456
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:375038841"
variation 2458
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:199751420"
variation 2472
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:369150602"
variation 2487
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:148854241"
exon 2500..2617
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2521
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:200021839"
variation 2557
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:138894221"
variation 2601
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:199511804"
variation 2610
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/db_xref="dbSNP:373318017"
exon 2618..2767
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2630
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:149396723"
variation 2637
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:368428563"
variation 2643
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:369928310"
variation 2699
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:200484566"
variation 2711
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:146398674"
variation 2728
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201471588"
exon 2768..2980
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2770
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:369635997"
variation 2848
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:368729037"
variation 2862
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:76896762"
variation 2899
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:377035892"
variation 2953
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:369744162"
variation 2954
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:11556799"
variation 2977
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:201232201"
exon 2981..3106
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 2981
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="c"
/db_xref="dbSNP:34418731"
variation 2989
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:138471194"
variation 3013
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:4889506"
variation 3043
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:372670313"
variation 3046
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:142343572"
variation 3070
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201957029"
variation 3086
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:368542250"
exon 3107..3247
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 3165
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:140097440"
exon 3248..3349
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 3304
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:61754473"
variation 3313
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:373316806"
variation 3314
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201668303"
exon 3350..5719
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/inference="alignment:Splign:1.39.8"
variation 3351
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:370853213"
variation 3361
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:199808715"
variation 3365
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/db_xref="dbSNP:373895036"
variation 3415
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:375969920"
variation 3434
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:370299929"
variation 3472..3473
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="g"
/db_xref="dbSNP:35083725"
variation 3481
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:373727066"
variation 3484
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:79828087"
variation 3534
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:367793448"
variation 3537
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:1048622"
variation 3541
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201807199"
variation 3542
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="c"
/db_xref="dbSNP:35676536"
variation 3558
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:72793383"
variation 3574
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:369342812"
variation 3765
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:112016949"
variation 3814
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:147181313"
variation 3906
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="c"
/db_xref="dbSNP:370917350"
variation 3915
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:11642862"
variation 4231
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="t"
/db_xref="dbSNP:189434372"
variation 4276
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="g"
/db_xref="dbSNP:138074304"
STS 4306..4427
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/standard_name="RH103172"
/db_xref="UniSTS:97505"
variation 4471..4472
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace=""
/replace="ggggggg"
/db_xref="dbSNP:146030134"
variation 4473
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="g"
/replace="t"
/db_xref="dbSNP:201124775"
variation 4477
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:139144017"
variation 4550
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:143079612"
variation 4555
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:371727012"
variation 4618
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:181540872"
variation 4636
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="t"
/db_xref="dbSNP:368844573"
variation 4758
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:185087026"
variation 4801
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:376360885"
variation 4806
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:11640414"
variation 4819
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:374375536"
variation 4888
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:190427175"
variation 4983
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="g"
/db_xref="dbSNP:373487580"
variation 4998
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:376441594"
variation 5018
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:3747486"
variation 5368
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:139244585"
variation 5431
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:201312074"
variation 5531
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:76853104"
variation 5552
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:372130434"
variation 5648
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:150074195"
variation 5649
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:114343697"
polyA_signal 5697..5702
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
variation 5700
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="a"
/replace="g"
/db_xref="dbSNP:181903935"
variation 5717
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
/replace="c"
/replace="t"
/db_xref="dbSNP:144385617"
polyA_site 5719
/gene="RNF40"
/gene_synonym="BRE1B; RBP95; STARING"
ORIGIN
acactcgcacgcgtccgcgcggccgacccatgcactgagctgcgatccttccccgcttcccgccgcagctcggagagatgttcaagctccgactgcaccctcattcccaaaaagtggctggtcttgcggttgagcatctcgccgctcttccgtgccgcgaggcgccccgggctcccgccgcctaggttccaggacagccagcgctcggtcggcggctaccaaggccgggcccgttcgcctcgctccggccaatctacgcgcggagaggcgcggcggggcgaatccgtgggggcgtctccctccgtctcaacggcgacggttgccaagggggcttgtgagggaaggaaggcggaaagcgcaggctcacgccagtgggagcgaagagaacgcgcagatacgtgagaagttgcgagtgcccacctgggcgccctctcttccaggttgctaatacgagggccggtgctgtcctccaggctgggaagtgggagcgcggtgtcagttactatgggaactgcctcttggccaatcaccgagagaaagaggaggtgtttgggaagaagccagaggacccgagtggcgggaccaagcgtaaccaatagaagcagaagataaagaagtttcctcacatccggggctgcctttggcgcctgcgccctgcgcaccgttggggggggggcagtggcgtccagtgacgcccagtgacgtccggtgaaatccaagatggcggcgctaggctgaccctcctgctggtgacggaagtaccgcctcctcccgtctgacgcccctcaggggaccctgcatcgctccagccgccgcggccatgtctgggccaggcaacaaacgcgccgccggcgacgggggctcagggcccccggaaaagaagctgagtcgtgaggagaagaccaccacgactcttatcgagcccattcgtcttggaggcatctcttccacggaggagatggacctgaaggtactacagttcaagaacaagaaactggcagagcggctggaacaacggcaggcttgtgaagatgaactccgagaacgaattgagaagttggagaagcggcaggccacagatgatgccacactcctcatcgtcaatcgctactgggcccagctggatgaaactgtggaagcccttctccgatgccatgagagccagggggagctgtcttcagcgcctgaggcacctgggacccaggaggggccaacatgtgatgggactcctctcccagagccggggacatcagagctgagagaccccttgctgatgcagctgcggccccctctcagtgagccggccttggcttttgtggtggcactgggtgccagcagcagtgaggaggtggagctggagctgcaaggccgaatggagttctccaaggcagctgtgtctcgtgtggtagaggcctcagaccgcctacagcgccgggtggaggaactctgtcagcgagtgtacagccgaggggacagtgagcccctcagtgaggcggctcaggcacacacccgagagctgggccgtgagaaccggcgactgcaggacttggccactcagctgcaggagaaacaccaccgcatctcattggagtactccgagctccaggataaagtgacatcggcagagaccaaggtgctggagatggagacaacagtggaggacttgcagtgggacatcgagaagctgcggaagcgagagcaaaagctcaataagcacctggcagaggccttagagcagcttaactctggctactatgtatctgggagctcctcaggcttccaggggggccagatcacactcagcatgcagaagagcgacgagctggggctgcagaagaagctacgcacagaggtcattcagctggaggacacgctggcccaggtacgcaaggagtatgagatgctgcgcatcgagtttgagcagaatctggcggccaacgagcaggcggggcccatcaaccgtgagatgcgccacctgattagtagtcttcaaaaccacaaccaccagctaaaaggggacgcccagcgatacaagcggaagcttcgagaagtacaagctgagattggcaagctccgggcccaggccagtggctctgcccactccacccccaacctgggccacccagaggattctggcgtcagtgccccagccccagggaaagaggagggtgggccaggccctgtcagtacccccgacaacagaaaggagatggctccagtgcctggcaccaccactactaccacttcagtgaagaaggaggagctggtcccctctgaagaggacttccagggtataacccctggggcccagggcccttcctcccggggccgagaacctgaggccaggcccaagcgggagcttcgggaacgggaaggtcccagcctaggacctccacctgtagcctccgctctctcaagggctgatcgggagaaggccaaggtggaagaaaccaagcggaaggaatcagaactcctcaagggtctccgagcagagctcaagaaggcccaggagagccagaaggagatgaaactgctgctggatatgtacaagtcagcgcccaaggagcagcgggataaggtgcagctcatggcagcggaacgcaaggctaaggccgaggttgatgagctgcggagccgcatccgggaattggaggagagggatcgaagggagagcaagaagatcgcggatgaggatgccctgcggcgcattcggcaggcagaggagcagatagaacacctgcagcgcaagctgggtgccaccaagcaggaggaggaggctctgctctcagagatggatgtgacaggtcaggcttttgaggacatgcaggaacagaacgggcggctgctacagcagttgcgggaaaaggatgatgccaactttaagctaatgtcagagcggatcaaggccaaccagattcacaagctgctgcgggaggagaaggatgagttgggcgagcaggtccttggcctcaagtcccaggtggatgcccagctgctgactgtgcagaagctggaggagaaggagcgagccttgcagggcagcctcgggggtgtggagaaggagctgacgctgcgcagccaagccctggagctcaacaagcggaaggctgtagaagccgcccagctggccgaggacctgaaggtgcagctggagcacgtgcagactcggctgcgggagatccagccctgcctggcagagagccgggctgctcgtgagaaagagagcttcaacctcaagagggctcaggaggacatctcacggctgcggcgcaagctggaaaagcagaggaaggtggaggtctacgcagatgccgacgaaatcctccaggaggagatcaaggagtacaaggcgcggttgacctgcccctgctgtaacacccgcaagaaggatgcagtccttaccaagtgcttccacgttttctgcttcgagtgcgtgcggggccgctatgaggcccgccagaggaagtgccccaagtgcaacgcggcctttggtgcccacgacttccatcgtatctacatcagctgaacctgaaactcaggggactctggaacaccatggaccctgggggctgtgcccccatctcctccccaccccaggtctagtggccccaccctccattccggaccccatgggcccagcccctgcccatctagttggtttggggaccctggtgcatgctagtgggcatgggatcagccaagcttcgttccatcttttcctaaaggtcagagctgcagcctagggggcactgccctacagaaaaggtctgcctgagaggcctgaggagcccagagcacttgactgagcttcccggaaactggccctaacctgtctgtctccgtggatgcatcctaaccctaaggaaaattccccaggctgtgatctaccctagagaaggctcgctccctgcctactggctcacaaatgaggaccagtgagccatgtccttgttccttgtttgagactgggctgcaggccccaggaagactttccttcacccaccatccccctaacctcggcagggcttctgtcctgtggagttccctggacaccttggtctggctcttgtgccaagggctgaaggaggtaccctcttggcagatgggggcatcacttgcttcctttgggaagctctaaggttgctgcagtcaccttcctcatcttgcaggtgctgaaccaacatcatcagtttctattctaatcaggccccttcccaatctccatttctctgccaagcccatttacccccacctcatgcatcccaaggctctactgggtccctggacctaaccctgctttcatcctggtggccttaactacagtggaggtggaacttcccaggaggggaagggacagaccagccccagccgctgggccaacttccaatcattccagctagaagagcttccccctgacaccctgtgactgagcctgtgtcctgtctgcctgcccagccatgctccatcggctgtgagggcagtgcccggagaggccagagggttggagctgcagggacccgtttggacccacagcctctgttctagagatgcttgtataggctgttaattgtgatgaataaacgttcaaccctcggcctgcagccagagtagccaggccgcgcaccccaaatgtagtcccccgattttagctgcagcagctgagcagcactttgctggcttggtgtgagcctgggagggctcagacttaacggccggcagggatcccggactgggcctgaaggggagagcgtggtggtcgtcgcggagccgcctgtcctgctcccaccgaccccggtctgaccacgtccttggctgtcatggccgggggatgccgggactcctcgggctgcatcctgggaagtgtagttcctggtccgcacatggttaggaggttctcggagagagagctagtttcccggttgcgctggccaaaggccggcctgaactggatcctgcggaccgcttctcagcggcttcacccccacaccactcgaatgcacagatcgggacacctcagctgggtgacttccctcgttgcaatcggcctcgggagcggtgcggcgtgtaccgagcggcgcccctgggctcagcgcgctgcaggcgccccgggcggatccttcaccgaggcaggactggggctggcgccagagccggtgcggagcggtgttggttcaggcgctggcgacagtgctatggccacggcaggggccgcgtgcgtctcagcggtggcgccttcggaccctattggcgcccgggacttaagcggggccgccgctgctggaccaggacgaactggagaaggagacgcgggccgccacggtgacctcgggcgtagggccggcggcggcgggcacgctggtggaagcgcgggccgcggcaggggaggacatcgggccgcagagaaagtgccgatggcctggggcagcggtgcgagggtgggaaaaacgcaggatattgcatcatagagacgcggccaccttcgcccctggagagcgccagtctcaggagcgccgcaccggtcacgggtggaggtcagccaggcctccgtaagcgcggtccccttccaggagtagccttcgcctgggctcttgagtagatgccaagtaattccgcatcgtctctctagatatctgcgctaaaggccacccggtctccttatcagaggggcaaaactctcctcgtgggtcttcatacctaataaaagtcggcatcaaaccacaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:9810 -> Molecular function: GO:0004842 [ubiquitin-protein ligase activity] evidence: IDA
GeneID:9810 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
GeneID:9810 -> Molecular function: GO:0008270 [zinc ion binding] evidence: IEA
GeneID:9810 -> Molecular function: GO:0017075 [syntaxin-1 binding] evidence: IEA
GeneID:9810 -> Molecular function: GO:0031625 [ubiquitin protein ligase binding] evidence: IPI
GeneID:9810 -> Molecular function: GO:0032403 [protein complex binding] evidence: IEA
GeneID:9810 -> Molecular function: GO:0042803 [protein homodimerization activity] evidence: IPI
GeneID:9810 -> Biological process: GO:0006511 [ubiquitin-dependent protein catabolic process] evidence: ISS
GeneID:9810 -> Biological process: GO:0010390 [histone monoubiquitination] evidence: IDA
GeneID:9810 -> Biological process: GO:0033523 [histone H2B ubiquitination] evidence: IDA
GeneID:9810 -> Cellular component: GO:0000151 [ubiquitin ligase complex] evidence: IDA
GeneID:9810 -> Cellular component: GO:0005634 [nucleus] evidence: IDA
GeneID:9810 -> Cellular component: GO:0005730 [nucleolus] evidence: IDA
GeneID:9810 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA
GeneID:9810 -> Cellular component: GO:0005886 [plasma membrane] evidence: IDA
GeneID:9810 -> Cellular component: GO:0033503 [HULC complex] evidence: IDA
GeneID:9810 -> Cellular component: GO:0043005 [neuron projection] evidence: ISS
ANNOTATIONS from NCBI Entrez Gene (20130726):
NP_001193963 -> EC 6.3.2.-
by
@meso_cacase at
DBCLS
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