Home |
Help |
Advanced search
2024-04-20 20:32:04, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001080462 1296 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens transmembrane protein 202 (TMEM202), mRNA.
ACCESSION NM_001080462 XM_294751
VERSION NM_001080462.1 GI:122937322
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AC009690.17
and AC079322.5.
On Jan 18, 2007 this sequence version replaced gi:113425307.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns ERS025085
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-81 AC009690.17 182238-182318
82-337 AC009690.17 182564-182819
338-487 AC079322.5 161587-161736 c
488-619 AC079322.5 161121-161252 c
620-1296 AC079322.5 159971-160647 c
FEATURES Location/Qualifiers
source 1..1296
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="15"
/map="15q24.1"
gene 1..1296
/gene="TMEM202"
/note="transmembrane protein 202"
/db_xref="GeneID:338949"
/db_xref="HGNC:33733"
CDS 1..822
/gene="TMEM202"
/codon_start=1
/product="transmembrane protein 202"
/protein_id="NP_001073931.1"
/db_xref="GI:122937323"
/db_xref="CCDS:CCDS32287.1"
/db_xref="GeneID:338949"
/db_xref="HGNC:33733"
/translation="
MERREHLTLTFHSPEVPKIKGNRKYQRPTVPAKKHPSASMSCQRQQQLMDQAHIYIRTLCGSLCSFSLLMLIAMSPLNWVQFLVIKNGLELYAGLWTLCNHELCWSHTPKPPYYLQYSRAFFLISVFTILTGLGWLFSSWILNRGSMTTNLDLKVSMLSFISATCLLLCLNLFVAQVHWHTRDAMESDLLWTYYLNWCSDIFYMFAGIISLLNYLTSRSPACDENVTVIPTERSRLGVGPVTTVSPAKDEGPRSEMESLSVREKNLPKSGLWW
"
misc_feature 157..225
/gene="TMEM202"
/inference="non-experimental evidence, no additional
details recorded"
/note="propagated from UniProtKB/Swiss-Prot (A6NGA9.1);
transmembrane region"
misc_feature 202..636
/gene="TMEM202"
/note="PMP-22/EMP/MP20/Claudin family; Region:
PMP22_Claudin; cl15797"
/db_xref="CDD:210197"
misc_feature 361..423
/gene="TMEM202"
/inference="non-experimental evidence, no additional
details recorded"
/note="propagated from UniProtKB/Swiss-Prot (A6NGA9.1);
transmembrane region"
misc_feature 463..525
/gene="TMEM202"
/inference="non-experimental evidence, no additional
details recorded"
/note="propagated from UniProtKB/Swiss-Prot (A6NGA9.1);
transmembrane region"
misc_feature 565..627
/gene="TMEM202"
/inference="non-experimental evidence, no additional
details recorded"
/note="propagated from UniProtKB/Swiss-Prot (A6NGA9.1);
transmembrane region"
exon 1..81
/gene="TMEM202"
/inference="alignment:Splign:1.39.8"
variation 7
/gene="TMEM202"
/replace="c"
/replace="g"
/db_xref="dbSNP:143325433"
variation 8
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:148351239"
variation 13
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:141553031"
variation 50
/gene="TMEM202"
/replace="a"
/replace="c"
/db_xref="dbSNP:150902792"
variation 62
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:137917554"
variation 67
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:139212164"
variation 68
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:142744410"
variation 80
/gene="TMEM202"
/replace="c"
/replace="g"
/db_xref="dbSNP:78142209"
variation 81
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:375698920"
exon 82..337
/gene="TMEM202"
/inference="alignment:Splign:1.39.8"
variation 88
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:200572212"
variation 117
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:140058943"
variation 155
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:199872123"
variation 160
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:149804291"
variation 169
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:368153584"
variation 170
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:200553858"
variation 173
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:147492128"
variation 174
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:148667101"
variation 204
/gene="TMEM202"
/replace=""
/replace="c"
/db_xref="dbSNP:374110538"
variation 207
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:192687764"
variation 261
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:368277906"
variation 276
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:142190891"
variation 325
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:372766881"
exon 338..487
/gene="TMEM202"
/inference="alignment:Splign:1.39.8"
variation 369
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:151215947"
variation 397
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:376359478"
variation 412
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:370205610"
variation 422
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:141474596"
variation 430
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:146921317"
variation 439
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:111257265"
exon 488..619
/gene="TMEM202"
/inference="alignment:Splign:1.39.8"
variation 523
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:200986530"
variation 524
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:370648223"
variation 530
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:147567382"
variation 544
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:142013465"
variation 546
/gene="TMEM202"
/replace="c"
/replace="g"
/db_xref="dbSNP:113026067"
variation 550
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:199977858"
variation 559
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:201146314"
variation 567
/gene="TMEM202"
/replace="c"
/replace="g"
/db_xref="dbSNP:150116129"
variation 610
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:16956904"
exon 620..1296
/gene="TMEM202"
/inference="alignment:Splign:1.39.8"
variation 638
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:149403533"
variation 640
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:371706800"
variation 656
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:143780703"
variation 657
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:35916586"
variation 675
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:374859725"
variation 676
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:143076809"
STS 689..828
/gene="TMEM202"
/standard_name="RH92065"
/db_xref="UniSTS:92421"
variation 697
/gene="TMEM202"
/replace="a"
/replace="c"
/db_xref="dbSNP:183845057"
variation 719
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:146051533"
variation 720
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:140026568"
variation 757
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:141447513"
variation 771
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:370098117"
variation 783
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:369575080"
variation 842
/gene="TMEM202"
/replace="c"
/replace="g"
/db_xref="dbSNP:372829280"
variation 844
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:375141280"
variation 955
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:112711703"
variation 1012..1013
/gene="TMEM202"
/replace=""
/replace="c"
/db_xref="dbSNP:35574101"
variation 1032
/gene="TMEM202"
/replace="a"
/replace="g"
/db_xref="dbSNP:375719157"
variation 1096
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:77676858"
variation 1166
/gene="TMEM202"
/replace="c"
/replace="t"
/db_xref="dbSNP:187867221"
variation 1296
/gene="TMEM202"
/replace="a"
/replace="t"
/db_xref="dbSNP:80292455"
ORIGIN
atggagcgaagggaacatttaaccttgactttccacagtcctgaggttcccaaaataaaggggaaccggaaataccaaaggcctaccgtccctgccaagaaacatccaagtgcctcgatgtcatgccaaaggcagcagcagcttatggatcaggcacacatctacatccgaacgctctgtggcagcctctgtagttttagcctcctaatgctgatcgccatgtccccactgaactgggtacagtttctggtgatcaagaatggccttgagctctacgcaggactctggaccttatgcaaccatgagctgtgctggagccacacacccaagccaccctattatctccaatattccagggccttctttctcatctctgtctttaccatacttactggccttggctggctcttcagctcttggatccttaatcgaggaagcatgaccaccaacttggatctgaaggtatccatgctcagcttcatctcagctacctgcttgctcctctgcctcaacctgtttgtggcacaggttcactggcatactagggatgccatggagtcagatctcctatggacctattatcttaactggtgcagtgacatcttttacatgtttgctgggatcatctctcttctcaactacttaacttccagatcgcctgcctgtgatgaaaacgtcactgtgattccaacagagagatcaaggctgggggttggtccggtgactacagtatcacctgctaaagatgaagggccaaggtctgagatggaatctctaagtgtgagagagaaaaatttaccaaagtcaggactgtggtggtgataggaaaacctaactatagcttgtcttaaaagcaggggagaagctgagttgggaatggtcacataaattctgggaaactctcctaatatcatgtccatattacttgaggagacagcattaaagctgatgaaatgtcttttgcgtgcattggatccaaaatatatatgatagtcataaagtaaataactcacttaagaaaaacatttctaaaagaaaacaacaatgtttagagtcatgaatgaaagaaactagtgaaagatgcagtgtgtagaccagagacctctttgggtatcagggatctcatggaccagaatggcccgtggagaagaatgttaattacttctgtttggaattttctttattatgtgtggctttgggtatactcaggatggaaagcacttggacaaatactgttgaatctgaacttaatagcattaccagaaatggaataaatatcaatggatataagaccta
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:338949 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA
by
@meso_cacase at
DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.