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2025-05-09 19:05:22, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_198215 3395 bp mRNA linear PRI 15-JUN-2013
DEFINITION Homo sapiens family with sequence similarity 13, member C (FAM13C),
transcript variant 1, mRNA.
ACCESSION NM_198215 XM_166142
VERSION NM_198215.3 GI:219555744
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3395)
AUTHORS Wu,J.H., Lemaitre,R.N., Manichaikul,A., Guan,W., Tanaka,T., Foy,M.,
Kabagambe,E.K., Djousse,L., Siscovick,D., Fretts,A.M., Johnson,C.,
King,I.B., Psaty,B.M., McKnight,B., Rich,S.S., Chen,Y.D.,
Nettleton,J.A., Tang,W., Bandinelli,S., Jacobs,D.R. Jr.,
Browning,B.L., Laurie,C.C., Gu,X., Tsai,M.Y., Steffen,L.M.,
Ferrucci,L., Fornage,M. and Mozaffarian,D.
TITLE Genome-wide association study identifies novel loci associated with
concentrations of four plasma phospholipid fatty acids in the de
novo lipogenesis pathway: results from the Cohorts for Heart and
Aging Research in Genomic Epidemiology (CHARGE) consortium
JOURNAL Circ Cardiovasc Genet 6 (2), 171-183 (2013)
PUBMED 23362303
REFERENCE 2 (bases 1 to 3395)
AUTHORS Karasik,D., Hsu,Y.H., Zhou,Y., Cupples,L.A., Kiel,D.P. and
Demissie,S.
TITLE Genome-wide pleiotropy of osteoporosis-related phenotypes: the
Framingham Study
JOURNAL J. Bone Miner. Res. 25 (7), 1555-1563 (2010)
PUBMED 20200953
REMARK GeneRIF: Observational study and genome-wide association study of
gene-disease association. (HuGE Navigator)
REFERENCE 3 (bases 1 to 3395)
AUTHORS Grupe,A., Li,Y., Rowland,C., Nowotny,P., Hinrichs,A.L., Smemo,S.,
Kauwe,J.S., Maxwell,T.J., Cherny,S., Doil,L., Tacey,K., van
Luchene,R., Myers,A., Wavrant-De Vrieze,F., Kaleem,M.,
Hollingworth,P., Jehu,L., Foy,C., Archer,N., Hamilton,G.,
Holmans,P., Morris,C.M., Catanese,J., Sninsky,J., White,T.J.,
Powell,J., Hardy,J., O'Donovan,M., Lovestone,S., Jones,L.,
Morris,J.C., Thal,L., Owen,M., Williams,J. and Goate,A.
TITLE A scan of chromosome 10 identifies a novel locus showing strong
association with late-onset Alzheimer disease
JOURNAL Am. J. Hum. Genet. 78 (1), 78-88 (2006)
PUBMED 16385451
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BC064431.1, AK289796.1, AI453702.1 and BM677909.1.
On Jan 6, 2009 this sequence version replaced gi:50897855.
Transcript Variant: This variant (1) encodes the longest isoform
(1).
##Evidence-Data-START##
Transcript exon combination :: BC036453.1, AK289796.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025081, ERS025082 [ECO:0000350]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-238 BC064431.1 1-238
239-2293 AK289796.1 165-2219
2294-3321 BC064431.1 1998-3025
3322-3374 AI453702.1 6-58 c
3375-3395 BM677909.1 1-21 c
FEATURES Location/Qualifiers
source 1..3395
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="10"
/map="10q21.1"
gene 1..3395
/gene="FAM13C"
/gene_synonym="FAM13C1"
/note="family with sequence similarity 13, member C"
/db_xref="GeneID:220965"
/db_xref="HGNC:19371"
/db_xref="HPRD:16875"
exon 1..196
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
misc_feature 21..23
/gene="FAM13C"
/gene_synonym="FAM13C1"
/note="upstream in-frame stop codon"
CDS 135..1892
/gene="FAM13C"
/gene_synonym="FAM13C1"
/note="isoform 1 is encoded by transcript variant 1;
family with sequence similarity 13, member C1; protein
FAM13C"
/codon_start=1
/product="protein FAM13C isoform 1"
/protein_id="NP_937858.2"
/db_xref="GI:50897856"
/db_xref="CCDS:CCDS7255.1"
/db_xref="GeneID:220965"
/db_xref="HGNC:19371"
/db_xref="HPRD:16875"
/translation="
MFSCFCFSLQDNSFSSTTVTECDEDPVSLHEDQTDCSSLRDENNKENYPDAGALVEEHAPPSWEPQQQNVEATVLVDSVLRPSMGNFKSRKPKSIFKAESGRSHGESQETEHVVSSQSECQVRAGTPAHESPQNNAFKCQETVRLQPRIDQRTAISPKDAFETRQDLNEEEAAQVHGVKDPAPASTQSVLADGTDSADPSPVHKDGQNEADSAPEDLHSVGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSTQQFMMPRSSSRCSCGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSAPKGPPRNLLCEQPTVPRENGKPEAAGPEPSSSGEETPDAALTCLKERREQLPPQEDSKVTKQDKNLIKPLYDRYRIIKQILSTPSLIPTIQEEEDSDEDRPQGSQQPSLADPASHLPVGDHLTYSNETEPVRALLPDEKKEVKPPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRIPMADEYYEYKHIKAKLRLLEVLISKQDVAKTI
"
exon 197..253
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 254..458
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 459..577
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 578..641
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 642..726
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 727..937
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 938..1076
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1077..1158
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1159..1370
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1371..1466
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1467..1666
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1667..1768
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
exon 1769..3378
/gene="FAM13C"
/gene_synonym="FAM13C1"
/inference="alignment:Splign:1.39.8"
STS 1946..2137
/gene="FAM13C"
/gene_synonym="FAM13C1"
/standard_name="G65661"
/db_xref="UniSTS:225452"
STS 2053..2152
/gene="FAM13C"
/gene_synonym="FAM13C1"
/standard_name="SHGC-30631"
/db_xref="UniSTS:51822"
variation 2437
/gene="FAM13C"
/gene_synonym="FAM13C1"
/replace="a"
/replace="t"
/db_xref="dbSNP:11540126"
STS 3200..3301
/gene="FAM13C"
/gene_synonym="FAM13C1"
/standard_name="D10S1860"
/db_xref="UniSTS:65450"
ORIGIN
gtgcagacagcagcccaaggtagagcgagcgtgccgggcgagcccggagacttgccttgcaatgccatgtttgtgtatgtgctctaactcccggagagcaatcagggagacggctccccggccagacttggctgatgttttcttgtttctgtttcagccttcaggataattccttcagcagcaccactgtaacagagtgtgacgaagatccagtctctctacatgaagaccagactgattgctccagtctcagagatgaaaacaataaagagaactaccccgacgcaggggctctggtagaagagcacgcgccgccctcttgggagccgcagcagcagaatgtagaggcgaccgtgctggtggacagcgtattgcgacccagcatgggcaacttcaagtccaggaagcccaagtccatcttcaaagcggagagcgggaggagccacggagaaagtcaggagacagagcatgtggtatccagccagtcagagtgtcaggtgagagcaggaacaccagctcatgagagtccacaaaacaatgccttcaagtgccaagaaacagtgcgacttcaaccaagaatagaccagaggactgccatttcgccaaaggatgcttttgaaactcggcaggacttaaatgaggaagaagctgctcaggtgcatggagtcaaggacccggcgccagcatcaacccagagcgtgcttgccgatgggacagattctgcagacccctcaccagtccacaaagatgggcagaatgaggccgacagtgcaccagaagacctccactctgtggggaccagcaggctgctctatcacatcactgatggtgataacccactgctgtcgccacgatgctccatcttcagccaaagccagagattcaacttagaccccgagtcagccccatctccacccagcactcagcagtttatgatgccgcggagttcttcacgctgcagctgtggagatggcaaggagccacagaccatcacccagctcaccaagcacatccagagcctcaagcggaaaattcggaaatttgaagaaaaatttgaacaagaaaagaaataccggccttcacatggtgacaagacttctaatcctgaagtcctgaaatggatgaatgatttggctaaaggtcgtaaacagctcaaagaactaaagctaaagctgtcagaagaacaagggagtgctcccaaaggtccacctagaaacctgttgtgtgagcaacccacagtccccagagaaaatgggaaaccggaagctgcgggcccggagccaagctcctctggagaagagactccagatgctgccttgacatgcctgaaggagagaagagagcaacttcctccccaggaggattctaaggtaactaagcaagacaagaacctcataaagccgctttatgaccgatacagaattatcaagcaaatcttgtcaacaccttcccttattccaacaattcaggaggaagaggactctgatgaagaccgtccacagggaagccaacaaccttctttggcagatccagcatctcaccttcctgttggtgaccacctcacctactctaatgagactgagcctgttagggcccttttaccagatgaaaagaaagaagtaaaaccaccagctctctccatgtctaatttacatgaggctaccatgcctgtacttcttgaccatctccgagaaactagggctgacaagaagagactgcggaaagccttaagagaatttgaagaacagttttttaaacaaacaggaagaagtccacaaaaggaagataggataccaatggcagatgagtattatgaatataagcacataaaagccaaactgagactattagaggtcctcatcagcaagcaagatgtggccaaaactatttgaggttcaggaaatgttatgatcactttcacccatgatataaagtaaagtttattttcctctgccatccttgctaagtagttttgacacaatgaaaatggaagcactttagtggtagtattagctgtttttaagaaggaatagcaagtttaattatatacaaggagaagggatttaaacggggggaagaatacaacaggtagccatataattgggaaaaaattcagtgtcctccatgccaagcagaaaactcatagtcaatacaagtatttttaaaaatgtctaatattttatcaaatctaaataacatagctaggacacttgttagggaaagtttatttagtatccaaagactgtttatgttgatgtatggaaaagagcatgattttaaaaaatcaatcataggaggaaaagaaattcgcttttcaagtaggaaggaatacagctagcaagaaagcaatttatttgaaacttctaatggatttttgagtgataaaacatttactaccttgtcctttaagtctgctaggctctcagtaccctaaaataaactagattgtgttgctattttttttctttctctataaaaataacacattattttatccgttatttgaaattttacatttctggttaccaaagttcattctgatagcatgtactttgtgaattattatctttgtctataactgacagatgtttatattaaaataaaatattgtattaaaaatttaaaataggtattttggatagatatgtgtctgtagtatataatctaatgtgtccatagtattattgctaatcttttggtttactataagatgatataactattttttcattgggaatatacatttttcttaatgttccaacatctatactttgtaaagtcaaaacatttcccatgagctgtagttattcatccttctgtacaaaatgaaaagtttggaaattgtttgccctgataccttgaaaaagaagccagaatatttatttgcttcatcaacttcagtgtatatcattttgtgttattttatacgaaaacatgtttattattttcatttttgtaaaaggaagtaaaaggtcaacattttctctcatgtaccaaccttgtttgtatttctattttctgtaatgtttaagtatgatgttgaagaaattcacattctcttatagtttggatgggaagactattgactatttcagaaacagacttatttcagaggcttattgttttctctgtatttacctaatattttataacttttatgaatcagaataatgtccttcataaatttgtttaattgaagtcatctacttctaacaggacagatacacaactatttgaggtttacaaattacatctttgataagggaaatggtttcgtgacatgtacacagttgctattaaaatgtaactctatatattctatatgattgtaaatattttatacaacaatacaaataaaatatttttctattatatttaaaaaaaaaaaaaaaaaa
//
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@meso_cacase at
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