Home |
Help |
Advanced search
2025-05-09 20:20:39, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_036652 1167 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens elongation factor Tu GTP binding domain containing 1
pseudogene 1 (EFTUD1P1), non-coding RNA.
ACCESSION NR_036652 XM_001713991 XM_001714858 XM_001714913 XM_001714916
XM_002343381 XM_002347554
VERSION NR_036652.1 GI:307938356
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1167)
AUTHORS Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
TITLE Diversification of transcriptional modulation: large-scale
identification and characterization of putative alternative
promoters of human genes
JOURNAL Genome Res. 16 (1), 55-65 (2006)
PUBMED 16344560
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
DB064528.1, DY655563.1 and AC103965.5.
On or before Oct 2, 2010 this sequence version replaced
gi:239745281, gi:239745283, gi:239756372, gi:239756374,
gi:239750894, gi:239750896.
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments of the
functional gene.
##Evidence-Data-START##
RNAseq introns :: mixed/partial sample support ERS025081, ERS025082
[ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-565 DB064528.1 1-565
566-966 DY655563.1 62-462
967-1027 AC103965.5 41829-41889 c
1028-1167 AC103965.5 36897-37036 c
FEATURES Location/Qualifiers
source 1..1167
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="15"
/map="15q25.2"
gene 1..1167
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/note="elongation factor Tu GTP binding domain containing
1 pseudogene 1"
/pseudo
/db_xref="GeneID:648809"
/db_xref="HGNC:31739"
misc_RNA 1..1167
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/product="elongation factor Tu GTP binding domain
containing 1 pseudogene 1"
/pseudo
/db_xref="GeneID:648809"
/db_xref="HGNC:31739"
exon 1..140
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 23
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:79590814"
variation 78
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:145691773"
exon 141..240
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 189
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:200382037"
exon 241..308
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 249
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:368647874"
exon 309..393
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 345
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:185681047"
variation 356
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="g"
/replace="t"
/db_xref="dbSNP:140114591"
variation 357
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:190637865"
variation 371
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:183490305"
exon 394..527
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 419
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:74026652"
variation 430
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:181501805"
variation 465
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="g"
/replace="t"
/db_xref="dbSNP:74026653"
exon 528..608
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 565
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:371682321"
variation 566
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="c"
/db_xref="dbSNP:11638297"
variation 576
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="g"
/db_xref="dbSNP:74026659"
exon 609..708
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 652
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:2659141"
variation 669
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:7176688"
exon 709..860
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 740
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:150426652"
variation 784
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/db_xref="dbSNP:201717391"
variation 831
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="c"
/db_xref="dbSNP:374428768"
exon 861..1027
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 865
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:61738831"
variation 866
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:61738832"
variation 892
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:2659152"
variation 930
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:2659153"
exon 1028..1167
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 1116
/gene="EFTUD1P1"
/gene_synonym="FAM42B; HsT19321"
/replace="c"
/replace="t"
/db_xref="dbSNP:374949278"
ORIGIN
gactcggcgccggcttccggcgccgtaagagaagcgtccgcgcgggcgttctggacccgcagagttctcggcgtttccgaagctcttggtgtggccgggacccgggagaaggagcagggctggtggggctgctgcagccggaaataatcatggtgctcaacagtttggataagatgattcaactccagaaaaacactgccaacatcaggaatatttgtgttttggctcatgttgaccgtggaaaaactactctggctgactgtcttatatctagcaatggaatcatctccagccacctagcaggcaagttaaggtacatggacagcagagaagatgaacagatccgagggatcactatgaaatccagtgccatttccctacattatgcaacaggtaatgaggagtacctgattaatctgatagactctccaggacacatggacttttcctcagacgtatcaaccgctgttcgcatttgtgatggatgcatcattgtggtagatgctgtggaaggagtctgtccacagcccagagaatggagagactgatgtgcacaggatcacaaacttttgactctcttccaccagaaactcaagcactgaaagcagcttttatgaaatgtggaagtgaggacactgctccagttatcatgtttgtttccaaaatgtttgcagttgatgctaaggccttgcctcagaataagccaaggcctctcactcaagaagaaattgctcagagacgtgagcgtgcaagacaaaggcatgcagagaagcttgcagcagcgcagggacaggcacccttggagcccacccaagatgggagtgccattgaaacatgtccaaaaggagaggagccaagaggtgacgagcaacaggtggaaagtatgacccccaaacctgtgctccaggaagaaaacaaccaagagtcttctattgcatttgctcgggtgttcagtggtgtggctcgaagaggaaagaaaatttttgtcttggggcccaaatacagtcctcttgagtttttacgaagggtaccattaggcttctcagctccaccagatggcctcccccaagtcccccacatggcatactgtgctctggaaaacctgtatcttctgatgggaagggaactggaatatctagaggaggtacctccaggaaatgtgctagg
//
by
@meso_cacase at
DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.