2025-05-09 18:49:27, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_182640 1473 bp mRNA linear PRI 07-JUL-2013 DEFINITION Homo sapiens mitochondrial ribosomal protein S9 (MRPS9), mRNA. ACCESSION NM_182640 VERSION NM_182640.2 GI:186910309 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1473) AUTHORS Hendrickson,S.L., Lautenberger,J.A., Chinn,L.W., Malasky,M., Sezgin,E., Kingsley,L.A., Goedert,J.J., Kirk,G.D., Gomperts,E.D., Buchbinder,S.P., Troyer,J.L. and O'Brien,S.J. TITLE Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression JOURNAL PLoS ONE 5 (9), E12862 (2010) PUBMED 20877624 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) Publication Status: Online-Only REFERENCE 2 (bases 1 to 1473) AUTHORS Kim,J.M., Lee,K.H., Jeon,Y.J., Oh,J.H., Jeong,S.Y., Song,I.S., Kim,J.M., Lee,D.S. and Kim,N.S. TITLE Identification of genes related to Parkinson's disease using expressed sequence tags JOURNAL DNA Res. 13 (6), 275-286 (2006) PUBMED 17213182 REFERENCE 3 (bases 1 to 1473) AUTHORS Ishiguchi,H., Izumi,H., Torigoe,T., Yoshida,Y., Kubota,H., Tsuji,S. and Kohno,K. TITLE ZNF143 activates gene expression in response to DNA damage and binds to cisplatin-modified DNA JOURNAL Int. J. Cancer 111 (6), 900-909 (2004) PUBMED 15300802 REFERENCE 4 (bases 1 to 1473) AUTHORS Zhang,Z. and Gerstein,M. TITLE Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome JOURNAL Genomics 81 (5), 468-480 (2003) PUBMED 12706105 REFERENCE 5 (bases 1 to 1473) AUTHORS Cavdar Koc,E., Burkhart,W., Blackburn,K., Moseley,A. and Spremulli,L.L. TITLE The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present JOURNAL J. Biol. Chem. 276 (22), 19363-19374 (2001) PUBMED 11279123 REFERENCE 6 (bases 1 to 1473) AUTHORS Koc,E.C., Burkhart,W., Blackburn,K., Koc,H., Moseley,A. and Spremulli,L.L. TITLE Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach JOURNAL Protein Sci. 10 (3), 471-481 (2001) PUBMED 11344316 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DT217261.1, BC057240.1 and BC036575.1. On Apr 29, 2008 this sequence version replaced gi:33188462. Summary: Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein. [provided by RefSeq, Jul 2008]. ##Evidence-Data-START## Transcript exon combination :: BC036575.1, BC057240.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025082 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: reported by MitoCarta ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-54 DT217261.1 1-54 55-1444 BC057240.1 9-1398 1445-1473 BC036575.1 1398-1426 FEATURES Location/Qualifiers source 1..1473 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="2" /map="2q12.1" gene 1..1473 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /note="mitochondrial ribosomal protein S9" /db_xref="GeneID:64965" /db_xref="HGNC:14501" /db_xref="HPRD:17602" /db_xref="MIM:611975" exon 1..203 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" misc_feature 21..23 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /note="upstream in-frame stop codon" variation 29 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:370658815" variation 44 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:375860355" CDS 69..1259 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /codon_start=1 /product="28S ribosomal protein S9, mitochondrial" /protein_id="NP_872578.1" /db_xref="GI:33188463" /db_xref="CCDS:CCDS2065.1" /db_xref="GeneID:64965" /db_xref="HGNC:14501" /db_xref="HPRD:17602" /db_xref="MIM:611975" /translation="
MAAPCVSYGGAVSYRLLLWGRGSLARKQGLWKTAAPELQTNVRSQILRLRHTAFVIPKKNVPTSKRETYTEDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYSLMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEFVQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR
" misc_feature 852..854 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 888..1256 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /note="Ribosomal protein S9/S16; Region: Ribosomal_S9; pfam00380" /db_xref="CDD:201193" misc_feature 927..929 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /experiment="experimental evidence, no additional details recorded" /note="N6-acetyllysine; propagated from UniProtKB/Swiss-Prot (P82933.2); acetylation site" variation 69 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:368493329" variation 73 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:149402894" variation 86 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:200121901" variation 106 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:13399067" variation 124 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:200027821" variation 127 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:201725510" variation 135 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:76640438" variation 154 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:376226529" variation 184 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="c" /db_xref="dbSNP:201247349" variation 189 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:200448846" variation 194 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:146513746" exon 204..383 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 257 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="c" /db_xref="dbSNP:187339922" variation 282 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="g" /db_xref="dbSNP:368177472" variation 311 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:149715863" variation 313 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:148856687" variation 316 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:139442155" variation 383 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:11538197" exon 384..446 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 401 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:200229354" variation 409 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:147264055" variation 426 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:77533759" variation 427 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:374087859" exon 447..477 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" exon 478..557 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 502 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:371019550" variation 513 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="g" /replace="t" /db_xref="dbSNP:202077550" variation 514 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:201445337" variation 521 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="g" /db_xref="dbSNP:200314985" variation 529 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="g" /replace="t" /db_xref="dbSNP:188400447" exon 558..643 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 565 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:368606260" variation 577 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:372692502" variation 623 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:11538198" exon 644..719 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 645 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:371663054" variation 699 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:183986236" exon 720..888 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 761 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="g" /replace="t" /db_xref="dbSNP:150881779" variation 766 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="g" /replace="t" /db_xref="dbSNP:201319316" variation 769 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:149588889" variation 779 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:149463519" variation 791 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:115050163" variation 802 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:116793449" variation 812 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:201404629" variation 826 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="t" /db_xref="dbSNP:369387444" variation 850 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:373106870" variation 858 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:147161518" variation 880 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:377378245" variation 884 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:6543282" variation 885 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:202009661" exon 889..997 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 894 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:373863935" variation 926 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:186804621" variation 963 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:200796955" variation 965 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="t" /db_xref="dbSNP:370548113" exon 998..1167 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 1034 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="g" /db_xref="dbSNP:180719074" variation 1037 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:200534814" variation 1074 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:145751106" variation 1079 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:202074511" variation 1082 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:15567" variation 1102 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:368226804" variation 1113 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:372027073" variation 1140 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:375392443" variation 1145 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:368660895" variation 1146 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:371609310" variation 1148 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:376674466" variation 1152 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:150040776" variation 1164 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:369132061" variation 1165 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:201203719" exon 1168..1458 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /inference="alignment:Splign:1.39.8" variation 1234 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:368179371" variation 1243 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:201628879" variation 1244 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="a" /replace="g" /db_xref="dbSNP:371901852" STS 1297..1423 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /standard_name="WI-14764" /db_xref="UniSTS:1616" variation 1306 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="c" /replace="t" /db_xref="dbSNP:9066" variation 1353 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" /replace="g" /replace="t" /db_xref="dbSNP:372634089" polyA_signal 1428..1433 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" polyA_signal 1439..1444 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" polyA_site 1447 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" polyA_site 1458 /gene="MRPS9" /gene_synonym="MRP-S9; RPMS9; S9mt" ORIGIN
attagcgcctgcgccgtctctaggccccgccccctcacccctccggtcctggagctcccacagctaacatggcggcgccctgtgtgtcctacggcggagcagtttcgtaccggcttcttctctggggtaggggtagcctcgcccggaagcaaggcctctggaaaaccgcggcccctgagttgcaaacaaatgtcagatcccagatattaaggctaagacatactgcatttgtaataccaaagaaaaacgttcctacctcaaaacgtgaaacttacacagaggattttattaaaaagcagattgaagagttcaacataggaaagagacatttagccaacatgatgggagaagatccagaaactttcactcaagaagatattgacagagctattgcttaccttttcccaagtggtttgtttgagaaacgagccaggccagtaatgaagcatcctgaacagatttttccaagacaaagagcaatccagtggggagaagatggccgtccatttcactatctcttctatactggcaaacagtcatactattcattaatgcatgatgtatatggaatgttactcaatttagaaaaacatcaaagtcacttgcaagccaaaagtctgctcccagaaaaaactgtaaccagagacgtgattggcagcagatggctgattaaggaggaactagaagaaatgttagtggaaaaactgtcagatctagattatatgcagttcattcggctgctagaaaagttattgacatcgcagtgtggtgctgctgaggaagaatttgtgcagaggtttcgaagaagtgtaactcttgaatcaaaaaaacagctgattgaacctgtacagtatgatgagcaaggaatggcctttagcaaaagtgaaggtaaaagaaagactgcaaaagcagaagcaattgtttataaacatggaagtggaagaataaaagtaaatggaattgattaccagctttacttcccgatcacacaggacagagaacagctgatgttccctttccactttgttgaccggctgggaaagcacgacgtgacctgcacagtctcagggggcgggaggtcagcgcaggctggagcaatacgactggcaatggcaaaagccttgtgcagctttgtcaccgaggacgaggtcgagtggatgagacaagctggactacttactactgatccacgtgtgagggaacggaagaagccaggccaagagggagcccgcagaaagtttacgtggaagaaacgctaagggtttgctcccaggaaaggagaggaagagctatatatatgtgccgacatgtggcagacacacagtaaataatggctgaccagcatgagggcagtactgtcagaaatttctttgagctgtgagatggatttatttttaaatgctactttgtaaaggtgacctttaaaaaataaaaggaaaataaagaatgttagtttcaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:64965 -> Molecular function: GO:0003735 [structural constituent of ribosome] evidence: IEA GeneID:64965 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:64965 -> Biological process: GO:0006412 [translation] evidence: IEA GeneID:64965 -> Biological process: GO:0042769 [DNA damage response, detection of DNA damage] evidence: NAS GeneID:64965 -> Biological process: GO:0043043 [peptide biosynthetic process] evidence: IC GeneID:64965 -> Cellular component: GO:0005763 [mitochondrial small ribosomal subunit] evidence: NAS
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