LOCUS       NR_036647               8713 bp    RNA     linear   PRI 16-JUL-2013
DEFINITION  Homo sapiens coiled-coil domain containing 144B (pseudogene)
            (CCDC144B), non-coding RNA.
ACCESSION   NR_036647 NM_182568 XM_001133829
VERSION     NR_036647.1  GI:307775431
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 8713)
  AUTHORS   Park,S.S., Stankiewicz,P., Bi,W., Shaw,C., Lehoczky,J., Dewar,K.,
            Birren,B. and Lupski,J.R.
  TITLE     Structure and evolution of the Smith-Magenis syndrome repeat gene
            clusters, SMS-REPs
  JOURNAL   Genome Res. 12 (5), 729-738 (2002)
   PUBMED   11997339
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DB113689.1,
            BC104815.1, BX647826.1 and AC107983.3.
            On Sep 29, 2010 this sequence version replaced gi:116517223.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                DB113689.1         1-85
            86-2391             BC104815.1         1-2306
            2392-3042           BX647826.1         2383-3033
            3043-3214           AC107983.3         117506-117677       c
            3215-6260           BX647826.1         3206-6251
            6261-6261           AC107983.3         77758-77758         c
            6262-8713           BX647826.1         6253-8704
FEATURES             Location/Qualifiers
     source          1..8713
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17p11.2"
     gene            1..8713
                     /gene="CCDC144B"
                     /note="coiled-coil domain containing 144B (pseudogene)"
                     /pseudo
                     /db_xref="GeneID:284047"
                     /db_xref="HGNC:26704"
     misc_RNA        1..8713
                     /gene="CCDC144B"
                     /product="coiled-coil domain containing 144B (pseudogene)"
                     /pseudo
                     /db_xref="GeneID:284047"
                     /db_xref="HGNC:26704"
     exon            1..514
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       8
                     /gene="CCDC144B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2936648"
     variation       223
                     /gene="CCDC144B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2936649"
     variation       250
                     /gene="CCDC144B"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:2936650"
     variation       338
                     /gene="CCDC144B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2649525"
     variation       465
                     /gene="CCDC144B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2649529"
     variation       470
                     /gene="CCDC144B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2649530"
     exon            515..585
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            586..834
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            835..908
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            909..1748
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            1749..1885
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            1886..1919
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            1920..2061
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            2062..2275
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            2276..2458
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            2459..2587
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       2539
                     /gene="CCDC144B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2649311"
     exon            2588..3541
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            3542..3835
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            3836..4056
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            4057..4266
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            4267..4309
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     exon            4310..8697
                     /gene="CCDC144B"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
ORIGIN      

cttacccgcgaggctttgcggtggctgcttggcttggcggtggtcgcttggcttggcgtggcagtgatcgcttggcttggcatttctggcttggcggtcctcctttcgcagattggaaaccgcgggctatcctgctgggaggttgtggccgaggcagtagctcgctactgatggcctcctggggtggagaaaagcggggaggggctgaggggtctccgaagctggcagtctacgccacgaggaagacccgtagcgtcaggagccaggaggaccagtggtacttgggctacccgggggaccagtggtcttcgggcttctcctacagctggtggaaaaatagcgtcggcagcgagagcaagcacggtgagggcgccttagaccagccccagcacgacgtccgcctggaagatcttggcgagctccacagagctgcccggtcgggcgacgtccctggggtggagcacgtcttggctcctggagacactggcgtggacaagagggataggaagaagagcattcagcaactagttcctgaatataaggaaaaacagacacctgaaagtcttcctcaaaataacaatccagattggcatcctactaatttgacccttagtgatgagacttgtcagagatccaagaatctgaaagttggtgataaaagtccatctgtatcaccatcaatgcctgaaaatcagtcagcaaccaaagaactgggacagatgaacttaacagaacgagaaaaaatggacactggagttgtacttctctcagggaatgatactctccatgacctgtgccaatcacagctaccagaaaacaaagagagcaaagaagcagaacaagacttggagctgacatcagaggaagagcaagaaagacttaaaggatgcgaaaataagcagccacagaaaacgtctcaagaaccagaaatggctaaggattgtgatagagaggatatacctatatatccagtacttcctcatgtgcaaaaatctgaggaaatgtggattgaacaaggcaaattagagtggaaaaaccaattaaaactcgtcataaatgagttaaagcagaggtttggtgaaatttatgaaaaatacaaaattccggcttgtcctgaggaagagccactacttgataactctacaagaggaacagatgtgaaggatattccctttaatttgacaaataacatacctggttgtgaggaagaagatgcatctgaaatatctgtctcagtggtattcgagacatttcctgaacaaaaagaacccagtctcaaaaatatcatccatccatactatcatccgtactctgggtcccaggaacatgtttgccagtcatcttctaagcttcatttacatgaaaataaattagactgcgacaatgataacaaactaggcattggacatatttttagtacagataacaactttcataatgatgcaagcactaagaaagcaaggaacccagaagtggttacggttgaaatgaaagaagaccaagagtttgatttgcaaatgacaaaaaatatgaaccaaaatagtgacagtggcagtacaaataactataaaagcctgaaacctaaattagaaaatctgagttctttaccaccagattctgacagaacatcagaagtatatctacatgaagaattacagcaagacatgcaaaagtttaagaatgaggtcaacacattagaagaagagttcctggctttgaagaaagaaaatgttcaacttcataaagaggttgaagaagaaatggagaagcacagaagtaatagcacagaattatcaggaaccctaactgatggtactactgttggcaatgatgatgatggactaaatcagcagattcctaggaaggaaaatgaagagcatgacaggcctgcagataaaacagctaatgaaaagaacaaggtcaaaaaccaaatatatcctgaggctgactttgctgactcaatggagccatctgaaatagcctcagaggattgtgaattgtctcactctgtttatgagaattttatgttgctgattgaacaacttagaatggagtataaagattctgctagcctaccaagaatccaagacacattttgtttgtgtgaacacttactgaaacttaagaataatcactgtgaccaacttacagtaaaacttaaacaaatggaaaatatggtcagtgtactacaaaatgagctatctgaaacaaaaaagacaaaattacagttagaacttcaaaaaattgaatgggagaaagagctgtacgatttgagacttgccttaaaacaagaaaatgggagaaaagaaatgccgatatgttgtataataaagatagtgaacagttaagaataaaagaagaggagtgtgggaaagtggttgaaacaaagcaacaacttaaatggaatctgagaagacttgttaaggaattgaggacagtaagaaataacttggatctggttgtgcaggagagaaacgatgcccagaagcaactttctgaagaacaggatgccagaatattacaagatcagattctgacaagtaaacaaaaggaactagaaatggctcaaaagaaaatgaattctgagatttctcataggcatcagaaagaaaagcatctctttcatgaaaattgcatgttgcaggaagaaattgccttgctgagactggaaatagatacaataaaaaatcagaacaagcaaaaggaaaagaaatattttgaggacattgaggctgtgaaagaaaagaatgataaccttcaaaaaattataaaactaaatgaggaaacattaacagaaacaatactccagtacagtggacagctgaacaatctgacagctgagaacaaaatactcaattctgaactggagaatgggaaacagaaccaagaaagactagaaatagaaatggaatcataccgttgtagactggctgctgctgtacgtgactgtgatcaaagtcagacagcaagagacctaaaacttgatttccagagaacaagacaagagtgggttcgtttacatgacaaaatgaaggttgatatgtctggcctacaagctaagaatgagattctttctgaaaaactttctaatgctgaaagtaaaattaacagcctacaaattcagctccataacacaagagatgctcttggaagagagagtttgattttggaacgtgtgcaaagagacctcagccaaacacagtgtcagaagaaagaaactgaacaaatgtaccaaattgaacaaagcaaactgaagaaatacattgccaagcaggaatctgtagaggagagattatctcaactacaaagtgaaaatacgttgcttcgacagcaactggatgatgctcacaagaaagctaacagtcaagaaaagacaagcagtactatccaagaccagtttcattctgctgccaaaaatcttcaagctgagagtgaaaagcagattctttcactacaagagaagaacaaggagctgatggatgaatataatcatttaaaagaaagaatggatcaatgtgagaaagagaaagcaggaagaaaaattgaccttacagaagcacaggaaactgtaccttcacgatgtctacatctggatgcagagaatgaagttcttcaacttcaacagacattattctctatgaaagcaatacaaaagcaatgtgaaacactacagaagaataagaagcagctgaaacaagaagtagtaaacctcaaaagttatatggaaagaaatatgttagaacgtggtgaaggtgaacggcataaactgttgattgaagaaagagcaaggaaggagatacaagaaaaattaaacgaagccgttctcaccttgcagaaacaagcagcagtatctcatgaacagttagcacagttaagggaggataatactacttcaataaaaactcagatggaactcacaatcaaagatctggaatctgaaatctccagaataaaaacttcgcaagccgactttaataaaaccgaattggaaagatataaggaactctacctagaagaagtaaaagttagagaatccttgtcaaatgaactcagtagaactaatgagatgatagcagaggtcagtacgcaacttactgtggagaaagagcagaccagatccagatctctattcactgcttatgctacaaggccagtcctaagtcaccttgcgttggaaatcttaatgatagtgaaggtctcaacagaaaacatattccaagaaaaaagaggtctgctcttaaggacatggagagctacttgttgaagatgcagcagaagttgcaaaatgatctaactgcagaagtagcagctgctactaaatatgaacctggatcctatatagcttctcctctaggatttacacacaaggaaaatctgaatcaagatccagttttggaagtaacaaaagagtatgcacagattttaagaagaaaatacatactctgaaagataaggcaattttatttgggctattcacatgatattttgtttcccattaaatatatgatgtgaacatttttactaaagggaaatattctatattatacatgtctgatgaaaatttatgtagtattttaaataatgtttcttggcctcttcagctaacttttaagtggattttgcaaatgaaaaccagtattactgagttttacatactcgaactgcccaaatgtttgctgtttaaacagccaaataatcaagttgccattagtaatttagtggagccaattgatggcttgtttgtattttataattttatctttatacatagtgatagatttaagtttagatagacatcattttggtatactggtactgtggtcattgtcaatgtttggatgtattacgattgttatagtgcaatcaaacttagataattttaattttaagcactgatttatttagatctttccttgtggaaaaataaggtttgcctaaggctttttgcttttttatttattgtttcatttctttattagattaacttttgggaaacagtcttaaaattggagaaaatttccacattttaggaaaaacagcttcccccctgtgggccatttgagagtaaattgctgacattatgccatcacatctggtatgtgggtattcccacaagtcaggacattttatataactacttcataatcagaaagttaacatcaatacacttgatcatttaattctcagtttcttttcaagttttcttaattgtctataatgttctttgtagcagaaggatcccattcaggtccatgaatttcatttagttgtcatgactctttcagtctggaacagttcctcagtttttctttgacctttatgaccttaaatcttttgaagagtaaagtccaataatacagaatgtccctccattggatttctctgaactttttttatgataagatttagatgataattttttttttggcaagagtatcacagaagttatcccatgatcttctcactgcattctatcaggtgacctgcaattattattattttttattttcatcttttaagttcaggggtacatgtgcaggatgtgcaggatgtccaggtttgttacataggtaaatatgtgccatggtggtttgctgcacagatcatcccatcacctaggtattaatagtagcccagcatccattagctgttcttcacgatgctctcccttctctcacccgccaccatcccacatgcccctgtgtgtgttgttccccgccatgtgtccatgtgttgtcattattcagctcccacttgtaagtgagagcatgcagtatttcattttctatttctgtgttggtttgctgaggataatgttctgcagctccacccatgtccctgcaaaggacatgtctcattccttttcatggctgcatagtattccatggtgtatatgtaccacattttctttatccagtttatcattgatgggcttttaggttgattctttgtctttgctgttgtgaatagtgctgcaatgaacatacgtgtgtgtgtatctttatactagaattagttatattcctttgggtatacaccaagtaatgggattgctgggttaaatggtatttcaggttctagatctttgaggaatcaccacactgtcttccacactggttgaactaatttacactcctatcaacggtgtaaaagcattcctgtttctccataatcttgccagcatcttttcagttttttgaattatagccattctgactgttgtgagatggtgtcttgttgtggttttgatttgcatttctcagatgatcagtgatgttgaggtttttttgtttgttggctgcatgtatgccttcttttgaaaagtgtctgtttgtgtcctttgaccactttctaatggggttgagttttttttttcttgtaaatttgtttaagttccttgtagatgctggatattagacctttgtcagatggatagagtgcaaaaattttctcccattctgtaggttgtcggtttactctgttgataggttcttaatgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgcaattgcttttggcatcttcgtcatgaaatctttgcccttgcctgtgtcctgaatggcattgcctaggttttctttcaggatttttatagttttgggttgtagatttaagtctttaatccatcttgagttaacttttgtatatgggttaaggaaggggtccagtttcaatttgctgcatatggctagccagttctcccagcaccatttattaaatagggaatcttttccccattgcttccttttgtcaggtttgtcaaagatcacatggttgtaggtgtgtggtcttatttctgggttctctattctgttccattggtctatgtgtcggttcttgtaccagcaccatgctgttttggttactgtagtcttgtagtatattttgaagctgggtagcatgatgcctctagctttgctcttcttgcttaggattgtcttggctatttgggctctgttttggttccatatgaattttaaaatagctttttctaggtctgtaaagaaggtcaatagtagtttaatgggcctagcatttaatttacagattgctttgggcagtgtggtcattttcacgatattgatccttcctgtctgtgagcatatgtttttccatttgtttgtgtcatctctgatttctttgaataatggtttatagttatccttgaaaaggtccttcacttttcttgttagctgtattcctaggtattatactcttcttgtggcaattgtgaatgggagttaattcatgatttttctctcggcttgcctgttgttggtgtataggaatgctagtgacttttgcacattgattttgtatcctgagactttgttgaagttgcttatcagctaagaggtttttgagctgagatgatggagttttctagatataggatcatatcatctgcaaacaaagatagtttgacttcctgtcttcctatttgaatagcttttctttctttctcttgcctgattgccttggtgagaatttctaatactgtgttgaataggagtggtgagagagggcatctttgtcttgtgtcagttttcaagggaacgcttccaggttttcaggtactcaggcaacaaatagcgctacgaatagaatagtacctcacatctcaatgctaatgttgaacgtaaatggcctaaatgctccacttaaaagatatagaatggcagaatgggtaagaattcaccaaccaagttgctgctgtcttcaggagactcacctaacacatacggactcacataaacttaaggcaaagggttggaaaaagacacttcgtctaaatggacacatcaaaagcgagcaggagtagctgttcttatatcagacaaaacggactttaagacaacagcagttttaaaaagacaaagagggacattatataatgataaaaggactagttcaacaggaaaatatcacagtcctaaatatatatgcacctaatactggagatcccaaatttataaaacaattactactagacataagaaatgaggtagttggcaacacaataatagtgggggatgttaatactccgctggcagcactaggcagatcaccaagacagaaagtcaacaaagaaacaatggacttaaactataccctagaacaaatggacttaacagatacttacagaacattctacccaacaagcatagaatatacattgtatacatcagaacacgggacattctccaaaatagaccatatgatagggcacaaaacaagtctcagtaaatttaagaaaatcagaattatatcaagtactctctcagaccacagtggaataaaattggaaattaattccgaaaggaacactcaaaagcatgcaaatacatggtaattaaataacctactcctgaatgattgttgggtcaacaatgatatcaagagggaaatttaaaaattctttgaactgaacgataatagtgacacagcctatcaaaaactctgggatacagcaaaagtggaggtaagaagaaaattcatagcattaaatgcctatatcaaaaagtctgaaagagcacaaataaacaatctaaggtcacacctcacagaattggagaaactagaacagtccaaatccaaacccagcagaagaaaagaaataacaaaatcagaacaaaactaaatgaaaaaaaaaaaaaaaaaaa

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