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2025-05-09 18:34:06, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_102763 1788 bp RNA linear PRI 17-JUL-2013
DEFINITION Homo sapiens GATA6 antisense RNA 1 (head to head) (GATA6-AS1),
non-coding RNA.
ACCESSION NR_102763 XR_109470 XR_111780 XR_172237
VERSION NR_102763.1 GI:493800010
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1788)
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36 (1), 40-45 (2004)
PUBMED 14702039
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AK123079.1.
On or before May 10, 2013 this sequence version replaced
gi:410173487, gi:310113231, gi:310123744.
##Evidence-Data-START##
Transcript exon combination :: AK123079.1, DA017074.1 [ECO:0000332]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-1788 AK123079.1 1-1788
FEATURES Location/Qualifiers
source 1..1788
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="18"
/map="18q11.2"
gene 1..1788
/gene="GATA6-AS1"
/note="GATA6 antisense RNA 1 (head to head)"
/db_xref="GeneID:100128893"
/db_xref="HGNC:48840"
misc_RNA 1..1788
/gene="GATA6-AS1"
/product="GATA6 antisense RNA 1 (head to head)"
/db_xref="GeneID:100128893"
/db_xref="HGNC:48840"
exon 1..302
/gene="GATA6-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(25)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:144923558"
variation complement(75)
/gene="GATA6-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:115330049"
variation complement(112)
/gene="GATA6-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:79335487"
variation complement(134)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:187376351"
variation complement(190)
/gene="GATA6-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:114082533"
variation complement(219)
/gene="GATA6-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:111231025"
variation complement(246)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:369259473"
exon 303..1788
/gene="GATA6-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(342)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:183680964"
variation complement(408)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:45491491"
variation complement(421)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:45508599"
variation complement(446)
/gene="GATA6-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:180790436"
variation complement(468)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:73390820"
variation complement(492)
/gene="GATA6-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:143199287"
variation complement(504)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:75757230"
variation complement(656)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:189713891"
variation complement(676)
/gene="GATA6-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:139965483"
variation complement(772)
/gene="GATA6-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:146032339"
variation complement(1032)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:9955740"
variation complement(1114)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:375636461"
variation complement(1119)
/gene="GATA6-AS1"
/replace=""
/replace="t"
/db_xref="dbSNP:35917816"
variation complement(1146)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:184879894"
variation complement(1318)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:374587322"
variation complement(1431..1432)
/gene="GATA6-AS1"
/replace="gc"
/replace="ta"
/db_xref="dbSNP:34725963"
variation complement(1431)
/gene="GATA6-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:11874952"
variation complement(1432)
/gene="GATA6-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:11874782"
variation complement(1514)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:12604478"
variation complement(1571)
/gene="GATA6-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:144071364"
variation complement(1581)
/gene="GATA6-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:377094322"
variation complement(1584)
/gene="GATA6-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:374831302"
variation complement(1597)
/gene="GATA6-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:9946505"
variation complement(1710..1711)
/gene="GATA6-AS1"
/replace=""
/replace="tgt"
/db_xref="dbSNP:72183639"
variation complement(1711..1712)
/gene="GATA6-AS1"
/replace=""
/replace="tgt"
/replace="tgttgt"
/db_xref="dbSNP:57305619"
variation complement(1721..1722)
/gene="GATA6-AS1"
/replace=""
/replace="ttg"
/replace="ttgttg"
/db_xref="dbSNP:35915662"
variation complement(1722..1723)
/gene="GATA6-AS1"
/replace=""
/replace="ttg"
/db_xref="dbSNP:111880619"
variation complement(1724..1725)
/gene="GATA6-AS1"
/replace=""
/replace="ttg"
/db_xref="dbSNP:72243848"
variation complement(1731..1732)
/gene="GATA6-AS1"
/replace=""
/replace="tgt"
/replace="ttg"
/db_xref="dbSNP:35885646"
variation complement(1732..1733)
/gene="GATA6-AS1"
/replace=""
/replace="gtt"
/db_xref="dbSNP:72054732"
variation complement(1733..1734)
/gene="GATA6-AS1"
/replace=""
/replace="gtt"
/replace="tttttttttt"
/db_xref="dbSNP:143738564"
variation complement(1734)
/gene="GATA6-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:192986224"
variation complement(1750..1751)
/gene="GATA6-AS1"
/replace=""
/replace="a"
/db_xref="dbSNP:34616556"
ORIGIN
aacccccgcctagccccttcacagcaaatgcgctttttgccctgaagttgtgtgagaccgaccttaaactttctccgaccctatctcgggatgctacggctcaggtcgtggtggtttcgggaacctcaagacaacattccccagctgacctttgggaactttaactcgggtcgtcatgtacggaaaggtagtctatggggtacgcagaatggaaaagggcttccacatcagtcgtgtccgaggacgctctccaacttttgatgtccctggagagtttctgatatttccctggagagtttcagaaaggatttcttccgacagacgtgaccccagaaggctgccgagggagactttaggacaagaggcgttgtttttgtgagaatgaatttttatactttaccccgaccccaccccctaccccccgcccaggtaaatccaagtaaatgattttctgaaggtcggtctcctagaaagcgtttaggctctggttttttgttttgtttctattttcgtgttttcccagttagggaaggaagaggagcctgtgcagagttgaactggggtggagaggtgccttgtaaagtatggtttccagagatggtgagacctcgtagctaagcgttgtttcctctgcacgtaactgtgagttgtgaacttgtggctcctgggggagcgggacagggcctggcagtgcgggggagggggcaaggaattcaggaagttggcgagaattcttcgtttttcattcttcgttgtaaattgcttctaaacacttctgaattttaaattgctaccgagaaggtccagaaaccgttctcatccaatttagtcacttttattacgttccactttgcctcccccaatcactgcggcggctcccagtttcagcgtggccgcatttggaaaaggctgaaggtagaaaactctggaatggagaggctggcgactggagcaggatccaggggctttaaattttaacctgaatgcgatcgaatgcgcgactcccagaagagatagccaggcgtccgcccggccgctcaacccccgccaggactcggaatgccttgcttttggttcttttcgtgagttccgaccaaatgtttaagtggactgggttttgcagaagctcatttgtaagcactgacggaaatgggttgtgggcatttgatttcctttgattccaacgttttgaaataatgtttctcggatttgctattcgaagcaattttctaaaaactcatatcttatttgctaaaaataaactctttggctcagtttgtgtccaggctgtgtacggcctccaaccctgagccccgaggagatcgagccctggcgcgagcctgatctctgtcctgtgtgtttctttgtatttgcaagtacaaggatgtctgcgtggatatccctggacactcgataccccccggggacctgcttttcccgcagctccgcagacgcggcgggagggcgcgctggccccggcgctgctgggacagaggtgagcagcggggtggacattgaccgattcgacaacgttcgggctctaagggctcgggaagggacccggcattttaccctccagattcccaatctatttttaaaaataatgttcaaaacatatgggaaaaataagtgattgctccttttcatggtcacagattgtatttattttttcagactggttttccaacctaacgagggaatgggtagtgaatgttgttgttgttgttgttgtttatgttggttaatttcgaaataaaactgtttaactcgtacagttgattcagacag
//
by
@meso_cacase at
DBCLS
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