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2025-05-09 19:28:24, GGRNA : RefSeq release 60 (20130726)
LOCUS XM_003960957 1269 bp mRNA linear PRI 30-OCT-2012 DEFINITION PREDICTED: Homo sapiens double homeobox 4 like 4 (DUX4L4), mRNA. ACCESSION XM_003960957 VERSION XM_003960957.1 GI:410170258 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_001841145) annotated using gene prediction method: GNOMON. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1269 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="Unknown" /sex="male" /dev_stage="adult" gene 1..1269 /gene="DUX4L4" /note="Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:441056" /db_xref="HGNC:38686" CDS 1..1269 /gene="DUX4L4" /codon_start=1 /transl_except=(pos:61..63,aa:OTHER) /transl_except=(pos:331..333,aa:OTHER) /transl_except=(pos:421..423,aa:OTHER) /product="LOW QUALITY PROTEIN: double homeobox 4 like 4" /protein_id="XP_003961006.1" /db_xref="GI:410170259" /db_xref="GeneID:441056" /db_xref="HGNC:38686" /translation="
MALPTSSDSTLPTEAQGRGRXRRLVWTPXQSEVLRTCFERNPYPGIATSDQLAQAIVIPEPRVQIWFQNERSRQLRQHQRDTRPGPRRRGPQEGRQKRTAVTVSQTALLLXAFEKDRFPGIIAREELARETGLPESRIQIXFQNRRARHPGQIGRANMQAGGLFNVAPGRYQPAPSWVDFAHTGAWGTVLHAPHVPCAPGDLPQGTFVSQAARAVPVLQPSQAAPAEGISQPTPACWDFAYTTPAPPEGALSHPQAPXWPPHPGKSREDRDPQCNGLLGPCTVGQPGPAQAGPQGQGVLAPLTSQGSPWWGWGRGPQVTRATWEPQAGTSPPPQPAPPEASPRQGHMQGIPAPSQVLQEPGHSSALPSGLLLDELLVSPEFLQQVQPFLEKEAPGELEALEETTSLEAPLREEECRALLEEL
"
misc_feature 58..234
/gene="DUX4L4"
/note="Homeodomain; DNA binding domains involved in the
transcriptional regulation of key eukaryotic developmental
processes; may bind to DNA as monomers or as homo- and/or
heterodimers, in a sequence-specific manner; Region:
homeodomain; cd00086"
/db_xref="CDD:28970"
misc_feature order(58..72,76..78,127..129,145..147,184..186,190..195,
202..207,211..219,223..228)
/gene="DUX4L4"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28970"
misc_feature order(64..66,73..75,193..195,202..207,214..216)
/gene="DUX4L4"
/note="specific DNA base contacts [nucleotide binding];
other site"
/db_xref="CDD:28970"
misc_feature 295..447
/gene="DUX4L4"
/note="Homeodomain; DNA binding domains involved in the
transcriptional regulation of key eukaryotic developmental
processes; may bind to DNA as monomers or as homo- and/or
heterodimers, in a sequence-specific manner; Region:
homeodomain; cd00086"
/db_xref="CDD:28970"
misc_feature order(295..297,301..303,352..354,370..372,409..411,
415..420,427..432,436..444)
/gene="DUX4L4"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:28970"
misc_feature order(298..300,418..420,427..432,439..441)
/gene="DUX4L4"
/note="specific DNA base contacts [nucleotide binding];
other site"
/db_xref="CDD:28970"
variation 81
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:192034245"
variation 88
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:181644038"
variation 176
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:199875395"
variation 217
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:201176248"
variation 308
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:202126523"
variation 593
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371128388"
variation 671
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:374300878"
variation 685
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:377664900"
variation 717
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:370872228"
variation 737
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:375389164"
variation 744
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:368001385"
variation 788
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:373672614"
variation 800
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:367563801"
variation 808
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:372231463"
variation 821
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:374471230"
variation 833
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:368371772"
variation 840
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:371877388"
variation 846
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:376224108"
variation 879
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:369280901"
variation 900
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:371910220"
variation 920
/gene="DUX4L4"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:74554690"
variation 929
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:199891345"
variation 932
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:200997204"
variation 933
/gene="DUX4L4"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:79557605"
variation 936
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:77750740"
variation 938
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:201426413"
variation 939
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:202166276"
variation 943
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:74372639"
variation 947
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:200466727"
variation 949
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:201390942"
variation 954
/gene="DUX4L4"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:199597415"
variation 963
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75415706"
variation 965
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:200506495"
variation 966
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:200991186"
variation 968
/gene="DUX4L4"
/replace="g"
/replace="t"
/db_xref="dbSNP:201445448"
variation 969
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75825492"
variation 980
/gene="DUX4L4"
/replace="a"
/replace="c"
/db_xref="dbSNP:200921186"
variation 981
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:76157822"
variation 990
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:72499998"
variation 1001
/gene="DUX4L4"
/replace="a"
/replace="t"
/db_xref="dbSNP:74328744"
variation 1002
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:199879627"
variation 1003
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:78088357"
variation 1006
/gene="DUX4L4"
/replace="a"
/replace="g"
/db_xref="dbSNP:75108513"
variation 1007
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:78443540"
variation 1009
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:79196034"
variation 1012
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:75800627"
variation 1017
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:77213040"
variation 1023
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:74688914"
variation 1027
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:77310966"
variation 1052
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:374952787"
variation 1103
/gene="DUX4L4"
/replace="c"
/replace="g"
/db_xref="dbSNP:368730197"
variation 1130
/gene="DUX4L4"
/replace=""
/replace="c"
/db_xref="dbSNP:372827166"
variation 1141
/gene="DUX4L4"
/replace="a"
/replace="t"
/db_xref="dbSNP:374525453"
variation 1154
/gene="DUX4L4"
/replace="c"
/replace="t"
/db_xref="dbSNP:377716962"
ORIGIN
atggccctcccgacatcttcagacagcaccctccccacagaagcccagggacggggacggtgaaggagactcgtttggaccccgnagcaaagtgaggtcctgcgaacctgctttgagcggaacccgtacccgggcatcgccaccagtgatcagctggcccaggccattgtgattccggagcccagggtccagatttggtttcagaatgagaggtcacgccagctgaggcagcaccagcgggatactcggcccgggcccaggagacgtggtccgcaagaaggcaggcaaaagcggaccgccgtcactgtatcccagactgccctgctactctgagcctttgagaaggatcgctttccaggcatcatcgccagggaagagctggccagagagacaggcctccctgagtccaggattcagatctgatttcagaatcgaagggccaggcacccgggacagattggcagggcgaacatgcaagcaggtggcctgttcaacgtggctcccggccggtatcaacctgctccctcgtgggtcgactttgcccacaccggcgcctggggaacagttcttcacgcaccccatgtgccctgcgcacctggggatctcccacaggggactttcgtgagccaggcagcgagggccgtccccgtgctccagccaagccaggccgcaccggcagaggggatctcccaacctaccccagcatgctgggattttgcctacaccactccggctcctccggaaggtgcgctctcccaccctcaggctccgnggtggcctccgcacccgggcaaaagccgggaggaccgggacccgcagtgcaacggcctgctgggcccttgcactgtgggacagcctgggcccgctcaagcggggccacagggccaaggtgtgcttgcgccactcacgtcccagggtagtccgtggtggggctggggccggggtccccaggtcaccagggcgacgtgggaaccccaagccgggacatctcctcctccccagcctgcacccccggaggcctccccgcggcaggggcacatgcaaggcatcccggcgccctcccaggtgctccaggagccggggcattcatctgcacttccctctggcctgctgctggatgagctcctggtgagcccggagtttctgcagcaggtgcaacctttcctagaaaaagaggccccgggagagctggaggccttggaagagaccacctcgctagaagcaccccttagagaggaagaatgccgggctctgctggaggagctttag
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:441056 -> Molecular function: GO:0000976 [transcription regulatory region sequence-specific DNA binding] evidence: IEA
GeneID:441056 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
GeneID:441056 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
GeneID:441056 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
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@meso_cacase at
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