LOCUS       NR_002223               2276 bp    RNA     linear   PRI 16-JUL-2013
DEFINITION  Homo sapiens tetra-peptide repeat homeobox-like (TPRXL), non-coding
            RNA.
ACCESSION   NR_002223 XM_496631
VERSION     NR_002223.3  GI:197383729
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Schuh-Huerta,S.M., Johnson,N.A., Rosen,M.P., Sternfeld,B.,
            Cedars,M.I. and Reijo Pera,R.A.
  TITLE     Genetic variants and environmental factors associated with hormonal
            markers of ovarian reserve in Caucasian and African American women
  JOURNAL   Hum. Reprod. 27 (2), 594-608 (2012)
   PUBMED   22116950
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. This record has been curated by NCBI staff in
            collaboration with Anne Booth and Peter Holland. The reference
            sequence was derived from DA837466.1, AK092426.1, AC090004.2 and
            BC016304.2.
            On Aug 29, 2008 this sequence version replaced gi:142384747.
            
            Summary: Homeobox genes encode DNA-binding proteins, many of which
            are thought to be involved in early embryonic development. Homeobox
            genes encode a DNA-binding domain of 60 to 63 amino acids referred
            to as the homeodomain. This pseudogene is a member of the TPRX
            homeobox gene family. [provided by RefSeq, Jul 2008].
            
            ##Evidence-Data-START##
            Transcript exon combination :: DA837466.1, AK092426.1 [ECO:0000332]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-134               DA837466.1         2-135
            135-660             AK092426.1         42-567
            661-1278            AC090004.2         79821-80438         c
            1279-2276           BC016304.2         1289-2286
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3p25.1"
     gene            1..2276
                     /gene="TPRXL"
                     /note="tetra-peptide repeat homeobox-like"
                     /pseudo
                     /db_xref="GeneID:348825"
                     /db_xref="HGNC:32178"
                     /db_xref="MIM:611167"
     misc_RNA        1..2276
                     /gene="TPRXL"
                     /product="tetra-peptide repeat homeobox-like"
                     /pseudo
                     /db_xref="GeneID:348825"
                     /db_xref="HGNC:32178"
                     /db_xref="MIM:611167"
     exon            1..173
                     /gene="TPRXL"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       107
                     /gene="TPRXL"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:375863011"
     variation       162
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:115947247"
     exon            174..303
                     /gene="TPRXL"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       255
                     /gene="TPRXL"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:9857415"
     variation       284
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142038408"
     exon            304..2263
                     /gene="TPRXL"
                     /inference="alignment:Splign:1.39.8"
                     /pseudo
     variation       331
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9862102"
     variation       389
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:141019957"
     variation       552
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:115336347"
     variation       608..634
                     /gene="TPRXL"
                     /replace=""
                     /replace="cagcagcagcatccccagcagcagctc"
                     /db_xref="dbSNP:11276518"
     variation       647
                     /gene="TPRXL"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:113851563"
     variation       647
                     /gene="TPRXL"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:62234606"
     variation       660
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:192562800"
     variation       661
                     /gene="TPRXL"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:4684179"
     variation       662
                     /gene="TPRXL"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:113575909"
     variation       677
                     /gene="TPRXL"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:111691316"
     variation       716..721
                     /gene="TPRXL"
                     /replace=""
                     /replace="ctccac"
                     /db_xref="dbSNP:200667665"
     variation       739
                     /gene="TPRXL"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:189018045"
     variation       743..744
                     /gene="TPRXL"
                     /replace=""
                     /replace="agc"
                     /db_xref="dbSNP:142895893"
     variation       744..745
                     /gene="TPRXL"
                     /replace=""
                     /replace="agc"
                     /db_xref="dbSNP:138518200"
     variation       870..875
                     /gene="TPRXL"
                     /replace=""
                     /replace="tccagc"
                     /db_xref="dbSNP:199550343"
     variation       882
                     /gene="TPRXL"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:144265507"
     variation       883
                     /gene="TPRXL"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:148665086"
     variation       936..941
                     /gene="TPRXL"
                     /replace=""
                     /replace="agctcc"
                     /db_xref="dbSNP:201852903"
     variation       941
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374945354"
     variation       961..962
                     /gene="TPRXL"
                     /replace=""
                     /replace="gcagcagccccagtagcagcg"
                     /db_xref="dbSNP:72439874"
     variation       1051
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:192579589"
     variation       1059..1064
                     /gene="TPRXL"
                     /replace=""
                     /replace="ccccgt"
                     /db_xref="dbSNP:72085875"
     variation       1074
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368935852"
     variation       1081
                     /gene="TPRXL"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:371967297"
     variation       1088
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376604625"
     variation       1089
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368343465"
     variation       1110..1111
                     /gene="TPRXL"
                     /replace=""
                     /replace="ccagcagtcccagca"
                     /db_xref="dbSNP:59708448"
     variation       1111
                     /gene="TPRXL"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:113667859"
     variation       1143
                     /gene="TPRXL"
                     /replace=""
                     /replace="a"
                     /db_xref="dbSNP:147965196"
     variation       1153..1154
                     /gene="TPRXL"
                     /replace=""
                     /replace="cagcagctgccccag"
                     /db_xref="dbSNP:11269752"
     variation       1154..1155
                     /gene="TPRXL"
                     /replace=""
                     /replace="cagcagctgccccag"
                     /db_xref="dbSNP:34648686"
     variation       1234
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372147451"
     variation       1278
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:2607779"
     variation       1347
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:76238554"
     variation       1369
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:184818003"
     variation       1395
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:189686284"
     variation       1431
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:180870698"
     variation       1528
                     /gene="TPRXL"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:185360732"
     variation       1539
                     /gene="TPRXL"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:189293073"
     variation       1676
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:181991997"
     variation       1703
                     /gene="TPRXL"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:146887121"
     variation       1723
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140729699"
     variation       1776
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:185967748"
     variation       1850
                     /gene="TPRXL"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:9990360"
     variation       2059
                     /gene="TPRXL"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:372067220"
     variation       2166
                     /gene="TPRXL"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2731334"
     variation       2194
                     /gene="TPRXL"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:200419078"
ORIGIN      

tgagaatatccagattctgccctggaggcctgcagggctggtgtgttcaggaagctgtttgaagatcagagcagagccctgtccacagcaaactaaaatgatggctatgtggacatgagcagcttcaacacctttaagaacaatcagcagagcacagaccaggacgcagaaagacagagtcttgccctgttgcccaggctggagtatagtagtgcagtggtgtgatcatagctcactgtaacttcgaccacctgggctcaaacaatccttcttcctctgcctcccaagtagctgggactacagagcaggacccaggatgcaagaccctaggcatccccaaggccttccactgtccccaggccttccaaagagacagcggcaggaccgcacaatctacaactggaaacagcaggaagtgctagaaaatcactttaaggaggaacagtacccagactatgacacacgacaagagctggcggagatgctcaatctcagggagtaccaagtgcaggtgtggttcaagaatcgccgggccaaacgctctcgggagcggtggttccagaagcagctccagcagctccagaagcatcctcagcagcagcatcctcagcagcagcatccccagcagcagctccagcagcagcagccccagcagcagccccagcagcagcagccccagcagcagccacagcagcagcagccccagcagcagcagctccaccagcagccccagtagcagctctagcagcagcagcagcagccccagcagcagcaactccagtagcagctccagcagcagcagccccagcagtagctccagcagcagcagcagcagccccagtagcagctccagcagccccagtagcagctccagcagcagcagcagcagccccagtagcagctccagcagccccagtagcagctctagcagcagcagctccagcagcagcagtcccagcagcagcagccccagtagcagcggcagcagccccagtagcagcaacagcagccccagtagtagcagcagcagccccagtagcagcagcagcagccccagcccccgtagcagcagccccagcagcagcagctccagcaccagcagtcccagcagcagcagtcccagcagcagcagccccagcagcagctgccccagtgcagccctgggcaggaggccacagagcccacagagctcgcactgtgccccctttccctgaagctgcggcctctgccccccatcagcctggcctcttgggaattctcccacagggagaggccccgtgggtattctcccacaatctgcagcctccaccaggccttgagtagctttgggtgcagagccaggagggcgtttggctgtcctaggtctagcccctggcccaatcccagccccattccaggcccactcaaaagccaaggcccaatcccaggtccaggctcaatcctaggccctggcctgattccaagccaggcttactcccaggcccaggcttagtcctagccccaatcccaggtcctggcccaatcccaaacttaggatccctcccagccccagccctagtccccttgtgacctcagagcacttatgcctccaatttcttgccagacagtcattccctgacttcacagagctcctcccacccctagaccagttcgaggaatccttggtctccaccacgacatctcagtaccaagagggggatggctctatggacaaaaagactcgggccccaagtgattaatggatttatagggggcctgtgtctgcaaagtcctgcggataccagtggacctggagtggctggttggtctacactgctggtgaatgcaccaccaccatttaaccaccctgccgctggtgggcatttgctgtcttcactgtgtggccatcacgactagctctgctatgaatgcacctgccctcatttgagttgagcctgagcatttcgcagctgggattggagtcgctgctcatggggatgtttggcattagtggatgctacttgagagctttgtaaagagctttactcagcacttctgatagtcagcattctccctgacacttaggattgtgagactttttaatgtttgtggatccaatggcttatggcttccctgatgactgagaggttgagaagttctcacatgttaattgaaccttagaaatcctcatatgtgtccatttgtttgcccatttttcttcatttatttgaatgtatttttatattctcttgataattaaagtgctgcaaacaccccccaaaaaaaaaaaaaaaaaa

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