2025-05-09 20:22:18, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_024865 2098 bp mRNA linear PRI 16-JUN-2013 DEFINITION Homo sapiens Nanog homeobox (NANOG), mRNA. ACCESSION NM_024865 VERSION NM_024865.2 GI:153945815 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2098) AUTHORS Wang,Y., Xu,Z., Jiang,J., Xu,C., Kang,J., Xiao,L., Wu,M., Xiong,J., Guo,X. and Liu,H. TITLE Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal JOURNAL Dev. Cell 25 (1), 69-80 (2013) PUBMED 23541921 REMARK GeneRIF: Linc-RoR (long intergenic non-protein coding RNA regulator of reprogramming) regulates endogenous Oct4, Nanog, and Sox2 expression in self-renewing and differentiating human embryonic stem cells. REFERENCE 2 (bases 1 to 2098) AUTHORS Amsterdam,A., Raanan,C., Schreiber,L., Polin,N. and Givol,D. TITLE LGR5 and Nanog identify stem cell signature of pancreas beta cells which initiate pancreatic cancer JOURNAL Biochem. Biophys. Res. Commun. 433 (2), 157-162 (2013) PUBMED 23438436 REMARK GeneRIF: the islet's beta cells, expressing LGR5 and Nanog markers are the initiating cells of pancreas cancer and Nanog is a major biomarker for pancreatic ductal adenocarcinomas REFERENCE 3 (bases 1 to 2098) AUTHORS Li,Y., Higashiyama,S., Shimakage,M., Kawahara,K., Yutsudo,M. and Watari,A. TITLE Involvement of NANOG upregulation in malignant progression of human cells JOURNAL DNA Cell Biol. 32 (3), 104-110 (2013) PUBMED 23427894 REMARK GeneRIF: NANOG was upregulated during malignant progression. REFERENCE 4 (bases 1 to 2098) AUTHORS Wu,J. and Tzanakakis,E.S. TITLE Contribution of stochastic partitioning at human embryonic stem cell division to NANOG heterogeneity JOURNAL PLoS ONE 7 (11), E50715 (2012) PUBMED 23226362 REMARK GeneRIF: role of NANOG heterogeneity in human embryonic stem cell division REFERENCE 5 (bases 1 to 2098) AUTHORS Yang,L., Zhang,X., Zhang,M., Zhang,J., Sheng,Y., Sun,X., Chen,Q. and Wang,L.X. TITLE Increased Nanog expression promotes tumor development and Cisplatin resistance in human esophageal cancer cells JOURNAL Cell. Physiol. Biochem. 30 (4), 943-952 (2012) PUBMED 23221432 REMARK GeneRIF: The sensitivity of cisplatin was decreased with increased expression of Nanog. Nanog expression could promote the proliferation and invasiveness of the cancer cells, and inhibit the apoptosis. REFERENCE 6 (bases 1 to 2098) AUTHORS Clark,A.T., Rodriguez,R.T., Bodnar,M.S., Abeyta,M.J., Cedars,M.I., Turek,P.J., Firpo,M.T. and Reijo Pera,R.A. TITLE Human STELLAR, NANOG, and GDF3 genes are expressed in pluripotent cells and map to chromosome 12p13, a hotspot for teratocarcinoma JOURNAL Stem Cells 22 (2), 169-179 (2004) PUBMED 14990856 REFERENCE 7 (bases 1 to 2098) AUTHORS Chambers,I., Colby,D., Robertson,M., Nichols,J., Lee,S., Tweedie,S. and Smith,A. TITLE Functional expression cloning of Nanog, a pluripotency sustaining factor in embryonic stem cells JOURNAL Cell 113 (5), 643-655 (2003) PUBMED 12787505 REFERENCE 8 (bases 1 to 2098) AUTHORS Mitsui,K., Tokuzawa,Y., Itoh,H., Segawa,K., Murakami,M., Takahashi,K., Maruyama,M., Maeda,M. and Yamanaka,S. TITLE The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells JOURNAL Cell 113 (5), 631-642 (2003) PUBMED 12787504 REFERENCE 9 (bases 1 to 2098) AUTHORS Cavaleri,F. and Scholer,H.R. TITLE Nanog: a new recruit to the embryonic stem cell orchestra JOURNAL Cell 113 (5), 551-552 (2003) PUBMED 12787492 REMARK Review article REFERENCE 10 (bases 1 to 2098) AUTHORS Constantinescu,S. TITLE Stemness, fusion and renewal of hematopoietic and embryonic stem cells JOURNAL J. Cell. Mol. Med. 7 (2), 103-112 (2003) PUBMED 12927049 REMARK Review article COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC006517.46. On Jul 26, 2007 this sequence version replaced gi:13376297. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AB093576.1, BC069807.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025098 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-367 AC006517.46 75962-76328 c 368-630 AC006517.46 72515-72777 c 631-717 AC006517.46 71184-71270 c 718-2098 AC006517.46 69668-71048 c FEATURES Location/Qualifiers source 1..2098 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="12" /map="12p13.31" gene 1..2098 /gene="NANOG" /note="Nanog homeobox" /db_xref="GeneID:79923" /db_xref="HGNC:20857" /db_xref="MIM:607937" exon 1..367 /gene="NANOG" /inference="alignment:Splign:1.39.8" variation 40 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:150329406" variation 58 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:137856893" STS 69..1301 /gene="NANOG" /db_xref="UniSTS:484047" misc_feature 97..99 /gene="NANOG" /note="upstream in-frame stop codon" variation 132 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:149459976" variation 168 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:375185896" variation 173 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:201306414" variation 196 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:369467702" CDS 217..1134 /gene="NANOG" /note="homeobox transcription factor Nanog; homeobox transcription factor Nanog-delta 48; hNanog" /codon_start=1 /product="homeobox protein NANOG" /protein_id="NP_079141.2" /db_xref="GI:153945816" /db_xref="CCDS:CCDS31736.1" /db_xref="GeneID:79923" /db_xref="HGNC:20857" /db_xref="MIM:607937" /translation="
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV
" misc_feature 508..678 /gene="NANOG" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:28970" misc_feature order(508..516,520..522,571..573,589..591,628..630, 634..639,646..651,655..663,667..672) /gene="NANOG" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:28970" misc_feature order(508..510,517..519,637..639,646..651,658..660) /gene="NANOG" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:28970" misc_feature 802..936 /gene="NANOG" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9H9S0.2); Region: 8 X repeats starting with a Trp in each unit" misc_feature 802..936 /gene="NANOG" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9H9S0.2); Region: Sufficient for transactivation activity (By similarity)" misc_feature 937..1131 /gene="NANOG" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9H9S0.2); Region: Sufficient for strong transactivation activity (By similarity)" variation 221 /gene="NANOG" /replace="c" /replace="g" /db_xref="dbSNP:142192505" variation 223 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:373057005" variation 263 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:2889552" variation 267 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:377465904" variation 275 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:142142006" variation 282 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:144872761" variation 290 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:138784058" variation 331 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:140243232" variation 351 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:371254743" variation 355 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:112366619" variation 360 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:2377097" exon 368..630 /gene="NANOG" /inference="alignment:Splign:1.39.8" variation 374 /gene="NANOG" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:71445169" variation 381 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:4294629" variation 413 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:201427723" variation 428 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:199844601" variation 462 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:2889551" variation 486 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:367909941" variation 492 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:4354764" variation 503 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:375983497" variation 531 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:145906125" variation 569 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:370774570" variation 579 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:4438116" variation 586 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:373700728" exon 631..717 /gene="NANOG" /inference="alignment:Splign:1.39.8" variation 693 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:142963939" exon 718..2098 /gene="NANOG" /inference="alignment:Splign:1.39.8" variation 744 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:148350742" variation 747 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:4012939" variation 756 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:200461817" variation 773 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:199733579" variation 783 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:150847430" variation 792 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:139890744" variation 975 /gene="NANOG" /replace="c" /replace="g" /db_xref="dbSNP:4012938" variation 1014 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:4012937" variation 1018 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:201280008" variation 1113 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:199634799" variation 1141 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:201891299" variation 1148 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:201553541" variation 1152 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:199508627" variation 1162 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:199701391" variation 1178 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:373028730" variation 1317 /gene="NANOG" /replace="" /replace="c" /db_xref="dbSNP:371533746" variation 1318 /gene="NANOG" /replace="" /replace="t" /db_xref="dbSNP:375879008" variation 1381 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:369573684" variation 1422 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:376103168" STS 1424..1506 /gene="NANOG" /standard_name="L18426" /db_xref="UniSTS:34648" variation 1448 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:2008442" variation 1453 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:3892960" STS 1456..1558 /gene="NANOG" /standard_name="D8S2278" /db_xref="UniSTS:473906" STS 1464..1553 /gene="NANOG" /standard_name="D8S2279" /db_xref="UniSTS:473907" variation 1551 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:370609162" variation 1603 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:374312411" variation 1631..1632 /gene="NANOG" /replace="" /replace="t" /db_xref="dbSNP:71038756" variation 1632 /gene="NANOG" /replace="" /replace="t" /db_xref="dbSNP:372788492" variation 1651 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:368729469" variation 1688..1689 /gene="NANOG" /replace="" /replace="gctaaggacaacattgatagaa" /db_xref="dbSNP:202064081" variation 1691..1694 /gene="NANOG" /replace="" /replace="taaggacaacattgatagaagc" /db_xref="dbSNP:71038757" variation 1702 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:183561928" variation 1723 /gene="NANOG" /replace="g" /replace="t" /db_xref="dbSNP:371159545" variation 1751 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:189371434" variation 1780 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:150094002" variation 1888..1889 /gene="NANOG" /replace="" /replace="ggc" /db_xref="dbSNP:201124730" variation 1891..1892 /gene="NANOG" /replace="" /replace="t" /db_xref="dbSNP:200881551" variation 1892 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:148073342" variation 1919 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:35472045" variation 1956 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:182372778" variation 1960 /gene="NANOG" /replace="c" /replace="t" /db_xref="dbSNP:34237790" variation 1992 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:34367740" variation 2024 /gene="NANOG" /replace="c" /replace="g" /db_xref="dbSNP:367992868" variation 2027 /gene="NANOG" /replace="a" /replace="c" /db_xref="dbSNP:35212015" variation 2073 /gene="NANOG" /replace="a" /replace="g" /db_xref="dbSNP:34956956" ORIGIN
attataaatctagagactccaggattttaacgttctgctggactgagctggttgcctcatgttattatgcaggcaactcactttatcccaatttcttgatacttttccttctggaggtcctatttctctaacatcttccagaaaagtcttaaagctgccttaaccttttttccagtccacctcttaaattttttcctcctcttcctctatactaacatgagtgtggatccagcttgtccccaaagcttgccttgctttgaagcatccgactgtaaagaatcttcacctatgcctgtgatttgtgggcctgaagaaaactatccatccttgcaaatgtcttctgctgagatgcctcacacggagactgtctctcctcttccttcctccatggatctgcttattcaggacagccctgattcttccaccagtcccaaaggcaaacaacccacttctgcagagaagagtgtcgcaaaaaaggaagacaaggtcccggtcaagaaacagaagaccagaactgtgttctcttccacccagctgtgtgtactcaatgatagatttcagagacagaaatacctcagcctccagcagatgcaagaactctccaacatcctgaacctcagctacaaacaggtgaagacctggttccagaaccagagaatgaaatctaagaggtggcagaaaaacaactggccgaagaatagcaatggtgtgacgcagaaggcctcagcacctacctaccccagcctttactcttcctaccaccagggatgcctggtgaacccgactgggaaccttccaatgtggagcaaccagacctggaacaattcaacctggagcaaccagacccagaacatccagtcctggagcaaccactcctggaacactcagacctggtgcacccaatcctggaacaatcaggcctggaacagtcccttctataactgtggagaggaatctctgcagtcctgcatgcagttccagccaaattctcctgccagtgacttggaggctgccttggaagctgctggggaaggccttaatgtaatacagcagaccactaggtattttagtactccacaaaccatggatttattcctaaactactccatgaacatgcaacctgaagacgtgtgaagatgagtgaaactgatattactcaatttcagtctggacactggctgaatccttcctctcccctcctcccatccctcataggatttttcttgtttggaaaccacgtgttctggtttccatgatgcccatccagtcaatctcatggagggtggagtatggttggagcctaatcagcgaggtttctttttttttttttttcctattggatcttcctggagaaaatactttttttttttttttttttgaaacggagtcttgctctgtcgcccaggctggagtgcagtggcgcggtcttggctcactgcaagctccgtctcccgggttcacgccattctcctgcctcagcctcccgagcagctgggactacaggcgcccgccacctcgcccggctaatattttgtatttttagtagagacggggtttcactgtgttagccaggatggtctcgatctcctgaccttgtgatccacccgcctcggcctccctaacagctgggatttacaggcgtgagccaccgcgccctgcctagaaaagacattttaataaccttggctgccgtctctggctatagataagtagatctaatactagtttggatatctttagggtttagaatctaacctcaagaataagaaatacaagtacaaattggtgatgaagatgtattcgtattgtttgggattgggaggctttgcttattttttaaaaactattgaggtaaagggttaagctgtaacatacttaattgatttcttaccgtttttggctctgttttgctatatcccctaatttgttggttgtgctaatctttgtagaaagaggtctcgtatttgctgcatcgtaatgacatgagtactgctttagttggtttaagttcaaatgaatgaaacaactatttttcctttagttgattttaccctgatttcaccgagtgtttcaatgagtaaatatacagcttaaacat
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:79923 -> Molecular function: GO:0001158 [enhancer sequence-specific DNA binding] evidence: IEA GeneID:79923 -> Molecular function: GO:0003677 [DNA binding] evidence: IDA GeneID:79923 -> Molecular function: GO:0003682 [chromatin binding] evidence: IEA GeneID:79923 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IDA GeneID:79923 -> Molecular function: GO:0003714 [transcription corepressor activity] evidence: ISS GeneID:79923 -> Biological process: GO:0000122 [negative regulation of transcription from RNA polymerase II promoter] evidence: IEA GeneID:79923 -> Biological process: GO:0001710 [mesodermal cell fate commitment] evidence: IEA GeneID:79923 -> Biological process: GO:0001714 [endodermal cell fate specification] evidence: IDA GeneID:79923 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA GeneID:79923 -> Biological process: GO:0006355 [regulation of transcription, DNA-dependent] evidence: IDA GeneID:79923 -> Biological process: GO:0008283 [cell proliferation] evidence: IMP GeneID:79923 -> Biological process: GO:0008284 [positive regulation of cell proliferation] evidence: IEA GeneID:79923 -> Biological process: GO:0008406 [gonad development] evidence: IEA GeneID:79923 -> Biological process: GO:0009790 [embryo development] evidence: IEP GeneID:79923 -> Biological process: GO:0009880 [embryonic pattern specification] evidence: IEA GeneID:79923 -> Biological process: GO:0010454 [negative regulation of cell fate commitment] evidence: IEA GeneID:79923 -> Biological process: GO:0010468 [regulation of gene expression] evidence: IMP GeneID:79923 -> Biological process: GO:0017145 [stem cell division] evidence: IEA GeneID:79923 -> Biological process: GO:0030154 [cell differentiation] evidence: IEP GeneID:79923 -> Biological process: GO:0030514 [negative regulation of BMP signaling pathway] evidence: IEA GeneID:79923 -> Biological process: GO:0032526 [response to retinoic acid] evidence: IEA GeneID:79923 -> Biological process: GO:0035019 [somatic stem cell maintenance] evidence: IMP GeneID:79923 -> Biological process: GO:0045595 [regulation of cell differentiation] evidence: IMP GeneID:79923 -> Biological process: GO:0045931 [positive regulation of mitotic cell cycle] evidence: IEA GeneID:79923 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IDA GeneID:79923 -> Cellular component: GO:0005634 [nucleus] evidence: IC GeneID:79923 -> Cellular component: GO:0005634 [nucleus] evidence: IDA GeneID:79923 -> Cellular component: GO:0005654 [nucleoplasm] evidence: IEA GeneID:79923 -> Cellular component: GO:0005730 [nucleolus] evidence: IDA
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