2025-05-09 19:16:35, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_018442 3420 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens DDB1 and CUL4 associated factor 6 (DCAF6), transcript variant 1, mRNA. ACCESSION NM_018442 VERSION NM_018442.3 GI:312176364 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3420) AUTHORS Chang,S.W., Lu,P.Y., Guo,J.H., Tsai,T.C., Tsao,Y.P. and Chen,S.L. TITLE NRIP enhances HPV gene expression via interaction with either GR or E2 JOURNAL Virology 423 (1), 38-48 (2012) PUBMED 22177699 REMARK GeneRIF: NRIP enhances HPV 16 gene expression via interaction with either GR or viral E2. REFERENCE 2 (bases 1 to 3420) AUTHORS Shi,Y., Li,Z., Xu,Q., Wang,T., Li,T., Shen,J., Zhang,F., Chen,J., Zhou,G., Ji,W., Li,B., Xu,Y., Liu,D., Wang,P., Yang,P., Liu,B., Sun,W., Wan,C., Qin,S., He,G., Steinberg,S., Cichon,S., Werge,T., Sigurdsson,E., Tosato,S., Palotie,A., Nothen,M.M., Rietschel,M., Ophoff,R.A., Collier,D.A., Rujescu,D., Clair,D.S., Stefansson,H., Stefansson,K., Ji,J., Wang,Q., Li,W., Zheng,L., Zhang,H., Feng,G. and He,L. TITLE Common variants on 8p12 and 1q24.2 confer risk of schizophrenia JOURNAL Nat. Genet. 43 (12), 1224-1227 (2011) PUBMED 22037555 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3420) AUTHORS Ehret,G.B., O'Connor,A.A., Weder,A., Cooper,R.S. and Chakravarti,A. TITLE Follow-up of a major linkage peak on chromosome 1 reveals suggestive QTLs associated with essential hypertension: GenNet study JOURNAL Eur. J. Hum. Genet. 17 (12), 1650-1657 (2009) PUBMED 19536175 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) REFERENCE 4 (bases 1 to 3420) AUTHORS Cheung,C.L., Chan,B.Y., Chan,V., Ikegawa,S., Kou,I., Ngai,H., Smith,D., Luk,K.D., Huang,Q.Y., Mori,S., Sham,P.C. and Kung,A.W. TITLE Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation JOURNAL Hum. Mol. Genet. 18 (4), 679-687 (2009) PUBMED 19064610 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) REFERENCE 5 (bases 1 to 3420) AUTHORS Han,C.P., Lee,M.Y., Tzeng,S.L., Yao,C.C., Wang,P.H., Cheng,Y.W., Chen,S.L., Wu,T.S., Tyan,Y.S. and Kok,L.F. TITLE Nuclear Receptor Interaction Protein (NRIP) expression assay using human tissue microarray and immunohistochemistry technology confirming nuclear localization JOURNAL J. Exp. Clin. Cancer Res. 27, 25 (2008) PUBMED 18673574 REMARK GeneRIF: A survey results showed that ten cancer cases were revealed to express the NRIP in six malignancies, but not all of these specific tumor types consistently showed positive NRIP expression. Publication Status: Online-Only REFERENCE 6 (bases 1 to 3420) AUTHORS Jin,J., Arias,E.E., Chen,J., Harper,J.W. and Walter,J.C. TITLE A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1 JOURNAL Mol. Cell 23 (5), 709-721 (2006) PUBMED 16949367 REFERENCE 7 (bases 1 to 3420) AUTHORS Oh,J.H., Yang,J.O., Hahn,Y., Kim,M.R., Byun,S.S., Jeon,Y.J., Kim,J.M., Song,K.S., Noh,S.M., Kim,S., Yoo,H.S., Kim,Y.S. and Kim,N.S. TITLE Transcriptome analysis of human gastric cancer JOURNAL Mamm. Genome 16 (12), 942-954 (2005) PUBMED 16341674 REFERENCE 8 (bases 1 to 3420) AUTHORS Tsai,T.C., Lee,Y.L., Hsiao,W.C., Tsao,Y.P. and Chen,S.L. TITLE NRIP, a novel nuclear receptor interaction protein, enhances the transcriptional activity of nuclear receptors JOURNAL J. Biol. Chem. 280 (20), 20000-20009 (2005) PUBMED 15784617 REMARK GeneRIF: NRIP interacts with either androgen or glucocorticoid receptors REFERENCE 9 (bases 1 to 3420) AUTHORS Barrios-Rodiles,M., Brown,K.R., Ozdamar,B., Bose,R., Liu,Z., Donovan,R.S., Shinjo,F., Liu,Y., Dembowy,J., Taylor,I.W., Luga,V., Przulj,N., Robinson,M., Suzuki,H., Hayashizaki,Y., Jurisica,I. and Wrana,J.L. TITLE High-throughput mapping of a dynamic signaling network in mammalian cells JOURNAL Science 307 (5715), 1621-1625 (2005) PUBMED 15761153 REFERENCE 10 (bases 1 to 3420) AUTHORS Tureci,O., Sahin,U., Koslowski,M., Buss,B., Bell,C., Ballweber,P., Zwick,C., Eberle,T., Zuber,M., Villena-Heinsen,C., Seitz,G. and Pfreundschuh,M. TITLE A novel tumour associated leucine zipper protein targeting to sites of gene transcription and splicing JOURNAL Oncogene 21 (24), 3879-3888 (2002) PUBMED 12032826 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA128283.1, AF116725.1, AL136738.1 and CA310484.1. On Nov 17, 2010 this sequence version replaced gi:63252907. Transcript Variant: This variant (1) lacks two in-frame exons in the CDS compared to variant 3. The resulting isoform (a) lacks two internal segments compared to isoform c. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns ERS025081, ERS025082 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-259 DA128283.1 1-259 260-1676 AF116725.1 1-1417 1677-3348 AL136738.1 262-1933 3349-3420 CA310484.1 1-72 c FEATURES Location/Qualifiers source 1..3420 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="1" /map="1q24.2" gene 1..3420 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="DDB1 and CUL4 associated factor 6" /db_xref="GeneID:55827" /db_xref="HGNC:30002" /db_xref="MIM:610494" exon 1..450 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" misc_feature 279..281 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="upstream in-frame stop codon" CDS 354..2996 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="isoform a is encoded by transcript variant 1; IQ motif and WD repeats 1; androgen receptor complex-associated protein; DDB1- and CUL4-associated factor 6; nuclear receptor interaction protein; IQ motif and WD repeat-containing protein 1" /codon_start=1 /product="DDB1- and CUL4-associated factor 6 isoform a" /protein_id="NP_060912.2" /db_xref="GI:63252908" /db_xref="CCDS:CCDS1267.2" /db_xref="GeneID:55827" /db_xref="HGNC:30002" /db_xref="MIM:610494" /translation="
MSRGGSYPHLLWDVRKRSLGLEDPSRLRSRYLGRREFIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATSVAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPVKRLRLRGDWSDTGPRARPESERERDGEQSPNVSLMQRMSDMLSRWFEEASEVAQSNRGRGRSRPRGGTSQSDISTLPTVPSSPDLEVSETAMEVDTPAEQFLQPSTSSTMSAQAHSTSSPTESPHSTPLLSSPDSEQRQSVEASGHHTHHQSDSPSSVVNKQLGSMSLDEQQDNNNEKLSPKPGTGEPVLSLHYSTEGTTTSTIKLNFTDEWSSIASSSRGIGSHCKSEGQEESFVPQSSVQPPEGDSETKAPEESSEDVTKYQEGVSAENPVENHINITQSDKFTAKPLDSNSGERNDLNLDRSCGVPEESASSEKAKEPETSDQTSTESATNENNTNPEPQFQTEATGPSAHEETSTRDSALQDTDDSDDDPVLIPGARYRAGPGDRRSAVARIQEFFRRRKERKEMEELDTLNIRRPLVKMVYKGHRNSRTMIKEANFWGANFVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPLEESRIFNRKLADEVITRNELMLEETRNTITVPASFMLRMLASLNHIRADRLEGDRSEGSGQENENEDEE
" misc_feature 480..>1211 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567" /db_xref="CDD:207648" misc_feature 489..>1310 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="FOG: WD40 repeat [General function prediction only]; Region: COG2319" /db_xref="CDD:32473" misc_feature order(501..503,555..557,567..569,585..590,627..632, 690..692,702..704,720..725,768..773,825..827,840..842, 858..863,900..902,975..977,990..992,1008..1013,1092..1097, 1161..1163,1173..1175,1191..1196) /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="structural tetrad; other site" /db_xref="CDD:29257" misc_feature 2373..2375 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 2382..2384 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 2547..>2780 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567" /db_xref="CDD:207648" variation complement(443) /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /replace="a" /replace="c" /db_xref="dbSNP:203788" exon 451..512 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 513..605 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 606..791 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" STS 607..744 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /standard_name="RH45968" /db_xref="UniSTS:81976" exon 792..905 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 906..1041 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1042..1256 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1257..1350 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1351..1470 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1471..1731 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" STS 1493..1602 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /standard_name="D1S2526" /db_xref="UniSTS:92704" exon 1732..1791 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1792..1909 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 1910..2025 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2026..2112 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2113..2440 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" STS 2126..2247 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /standard_name="RH64705" /db_xref="UniSTS:37862" exon 2441..2579 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2580..2736 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2737..2825 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2826..2931 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" exon 2932..3404 /gene="DCAF6" /gene_synonym="1200006M05Rik; ARCAP; IQWD1; MSTP055; NRIP; PC326; RP4-745I14.1" /inference="alignment:Splign:1.39.8" ORIGIN
atctcgcgagaaagggttggcggggagggtatccaggacgaggagagggaggagtcgccatcgcctccgcctccgcctcctcctgttggaggggggctgagggaggagactgttgctgatctttggatgttctggttagtctaagaaggagagtatgaggcgagctccggcccgggtgcggccgggcttcaggggcccaggcgccgctgctgccaccgccatctaacgctgcgccctggaggcccggcgcgcggatggtgccggtgcggctcgggtgttgaaacgggtgtcccctccccctcctcccctcccccacgcggtggtctcccctcccacccggctcaggcagagccatgtctcggggtggctcctacccacacctgttgtgggacgtgaggaaaaggtccctcgggctggaggacccgtcccggctgcggagtcgctacctgggaagaagagaatttatccaaagattaaaacttgaagcaacccttaatgtgcatgatggttgtgttaatacaatctgttggaatgacactggagaatatattttatctggctcagatgacaccaaattagtaattagtaatccttacagcagaaaggttttgacaacaattcgttcagggcaccgagcaaacatatttagtgcaaagttcttaccttgtacaaatgataaacagattgtatcctgctctggagatggagtaatattttataccaacgttgagcaagatgcagaaaccaacagacaatgccaatttacgtgtcattatggaactacttatgagattatgactgtacccaatgacccttacacttttctctcttgtggtgaagatggaactgttaggtggtttgatacacgcatcaaaactagctgcacaaaagaagattgtaaagatgatattttaattaactgtcgacgtgctgccacgtctgttgctatttgcccaccaataccatattaccttgctgttggttgttctgacagctcagtacgaatatatgatcggcgaatgctgggcacaagagctacagggaattatgcaggtcgagggactactggaatggttgcccgttttattccttcccatcttaataataagtcctgcagagtgacatctctgtgttacagtgaagatggtcaagagattctcgttagttactcttcagattacatatatctttttgacccgaaagatgatacagcacgagaacttaaaactccttctgcggaagagagaagagaagagttgcgacaaccaccagttaagcgtttgagacttcgtggtgattggtcagatactggacccagagcaaggccggagagtgaacgagaacgagatggagagcagagtcccaatgtgtcattgatgcagagaatgtctgatatgttatcaagatggtttgaagaagcaagtgaggttgcacaaagcaatagaggacgaggaagatctcgacccagaggtggaacaagtcaatcagatatttcaactcttcctacggtcccatcaagtcctgatttggaagtgagtgaaactgcaatggaagtagatactccagctgaacaatttcttcagccttctacatcctctacaatgtcagctcaggctcattcgacatcatctcccacagaaagccctcattctactcctttgctatcttctccagacagtgaacaaaggcagtctgttgaggcatctggacaccacacacatcatcagtctgattctccttcttctgtggttaacaaacagctcggatccatgtcacttgacgagcaacaggataacaataatgaaaagctgagccccaaaccagggacaggtgaaccagttttaagtttgcactacagcacagaaggaacaactacaagcacaataaaactgaactttacagatgaatggagcagtatagcatcaagttctagaggaattgggagccattgcaaatctgagggtcaggaggaatctttcgtcccacagagctcagtgcaaccaccagaaggagacagtgaaacaaaagctcctgaagaatcatcagaggatgtgacaaaatatcaggaaggagtatctgcagaaaacccagttgagaaccatatcaatataacacaatcagataagttcacagccaagccattggattccaactcaggagaaagaaatgacctcaatcttgatcgctcttgtggggttccagaagaatctgcttcatctgaaaaagccaaggaaccagaaacttcagatcagactagcactgagagtgctaccaatgaaaataacaccaatcctgagcctcagttccaaacagaagccactgggccttcagctcatgaagaaacatccaccagggactctgctcttcaggacacagatgacagtgatgatgacccagtcctgatcccaggtgcaaggtatcgagcaggacctggtgatagacgctctgctgttgcccgtattcaggagttcttcagacggagaaaagaaaggaaagaaatggaagaattggatactttgaacattagaaggccgctagtaaaaatggtttataaaggccatcgcaactccaggacaatgataaaagaagccaatttctggggtgctaactttgtaatgagtggttctgactgtggccacattttcatctgggatcggcacactgctgagcatttgatgcttctggaagctgataatcatgtggtaaactgcctgcagccacatccgtttgacccaattttagcctcatctggcatagattatgacataaagatctggtcaccattagaagagtcaaggatttttaaccgaaaacttgctgatgaagttataactcgaaacgaactcatgctggaagaaactagaaacaccattacagttccagcctctttcatgttgaggatgttggcttcacttaatcatatccgagctgaccggttggagggtgacagatcagaaggctctggtcaagagaatgaaaatgaggatgaggaataataaactctttttggcaagcacttaaatgttctgaaatttgtataagacatttattatatttttttctttacagagctttagtgcaattttaaggttatggtttttggagtttttccctttttttgggataacctaacattggtttggaatgattgtgtgcatgaatttgggagattgtataaaacaaaactagcagaatgtttttaaaactttttgccgtgtatgaggagtgctagaaaatgcaaagtgcaatattttccctaaccttcaaatgtgggagcttggatcaatgttgaagaataattttcatcatagtgaaaatgttggttcaaataaatttctacacttgccatttgcatgtttgttgctttctaattaaagaaactggttgttttaagataccctgaaaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:55827 -> Molecular function: GO:0030374 [ligand-dependent nuclear receptor transcription coactivator activity] evidence: IDA GeneID:55827 -> Biological process: GO:0016567 [protein ubiquitination] evidence: IC GeneID:55827 -> Biological process: GO:0016567 [protein ubiquitination] evidence: IEA GeneID:55827 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IGI GeneID:55827 -> Cellular component: GO:0005634 [nucleus] evidence: IDA GeneID:55827 -> Cellular component: GO:0080008 [Cul4-RING ubiquitin ligase complex] evidence: IDA
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