LOCUS       NM_001145465             907 bp    mRNA    linear   PRI 13-APR-2013
DEFINITION  Homo sapiens NANOG neighbor homeobox (NANOGNB), mRNA.
ACCESSION   NM_001145465 XR_040558 XR_040559 XR_040560
VERSION     NM_001145465.1  GI:224451052
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY151139.1.
            On or before Mar 1, 2009 this sequence version replaced
            gi:169204237, gi:169204540, gi:169205134.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY151139.1, BI464932.1 [ECO:0000332]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-907               AY151139.1         1-907
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="12"
                     /map="12p13.31"
     gene            1..907
                     /gene="NANOGNB"
                     /note="NANOG neighbor homeobox"
                     /db_xref="GeneID:360030"
                     /db_xref="HGNC:24958"
     exon            1..172
                     /gene="NANOGNB"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    59..61
                     /gene="NANOGNB"
                     /note="upstream in-frame stop codon"
     CDS             71..637
                     /gene="NANOGNB"
                     /note="homeobox protein C14; homeobox C14"
                     /codon_start=1
                     /product="NANOG neighbor homeobox"
                     /protein_id="NP_001138937.1"
                     /db_xref="GI:224451053"
                     /db_xref="CCDS:CCDS44826.1"
                     /db_xref="GeneID:360030"
                     /db_xref="HGNC:24958"
                     /translation="

MHRARWLTPVIPALWEAEAGRSRGQEIETILANKKQSAMPWDQDPEQSTGNYSEDEQNGKQKWREEGEAGRKREREKEEKNEKELQDEQENKRKRENEKQKQYPEKRLVSKSLMHTLWAKFKLNRCPTIQESLSLSFEFDMTHKQISQWFCKTRKKYNKEMSKRKHKKKHMRWRSLCCQGWSRTPALK

"
     variation       84
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:141049797"
     variation       120
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149820722"
     variation       121
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145794794"
     variation       125
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:12818448"
     variation       154
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143053607"
     exon            173..505
                     /gene="NANOGNB"
                     /inference="alignment:Splign:1.39.8"
     variation       243
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:114136506"
     variation       293
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:185000545"
     variation       313
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:75086416"
     variation       314
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143895543"
     variation       374
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:373676869"
     exon            506..585
                     /gene="NANOGNB"
                     /inference="alignment:Splign:1.39.8"
     variation       528
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:77290736"
     variation       541
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199917356"
     variation       577
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:376922335"
     exon            586..907
                     /gene="NANOGNB"
                     /inference="alignment:Splign:1.39.8"
     variation       617
                     /gene="NANOGNB"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:184126538"
     variation       699
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:58053555"
     variation       801
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187979580"
     variation       853
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:180838803"
     variation       865
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148911844"
     variation       874
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:147013986"
     variation       900
                     /gene="NANOGNB"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:371494215"
ORIGIN      

atctaccttatctggtcggtcatctctgtaacctccctaccaaggactaattggtctttaaaactcctcaatgcaccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcagatcacgaggtcaggaaatcgagaccatcttggctaacaagaaacaatcagctatgccttgggatcaagatccagaacaatcaactggaaattacagtgaagatgaacaaaatggaaagcagaaatggagagaagaaggagaagcaggcagaaagagagaacgagaaaaagaagaaaaaaacgaaaaggagctgcaagatgaacaggaaaacaaaaggaaaagggaaaatgagaaacagaaacagtatcccgagaaaagattagtcagcaaatccctcatgcatactctctgggcaaagtttaagttaaacaggtgccccactatacaagagagtctatcactgtcatttgaatttgacatgacacataaacagataagtcaatggttttgtaaaacgaggaagaaatataataaagaaatgtccaagagaaagcataagaaaaaacatatgagatggagatctctgtgttgccaaggctggtctcgaactcctgccctcaagtgatcttcctattttggcctccagaaatgctgtgattacaagcatgagccatcgcactggctaagacattttacatgacaccattctcaccaataaatggagttctgaaaggataaacaagaaaacattaacagtcgttgattccgtggagtagaactaaatgaggggtatgcaaaggagtttttatgtgttttatttttaccctactgtagatttaaagtttttataatggatgttaattgattttatttaagaaaaaaaatcgagtcaagg

//

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:360030 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
            GeneID:360030 -> Molecular function: GO:0043565 [sequence-specific DNA binding] evidence: IEA
            GeneID:360030 -> Cellular component: GO:0005634 [nucleus] evidence: IEA