2025-05-09 20:18:04, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_138484 1548 bp mRNA linear PRI 14-APR-2013 DEFINITION Homo sapiens shugoshin-like 1 (S. pombe) (SGOL1), transcript variant C2, mRNA. ACCESSION NM_138484 VERSION NM_138484.3 GI:312922398 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1548) AUTHORS Greenwood,T.A., Akiskal,H.S., Akiskal,K.K. and Kelsoe,J.R. CONSRTM Bipolar Genome Study TITLE Genome-wide association study of temperament in bipolar disorder reveals significant associations with three novel Loci JOURNAL Biol. Psychiatry 72 (4), 303-310 (2012) PUBMED 22365631 REFERENCE 2 (bases 1 to 1548) AUTHORS Liu,L., Zhang,N., Liu,J., Min,J., Ma,N., Liu,N., Liu,Y. and Zhang,H. TITLE Lentivirus-mediated siRNA interference targeting SGO-1 inhibits human NSCLC cell growth JOURNAL Tumour Biol. 33 (2), 515-521 (2012) PUBMED 22161216 REMARK GeneRIF: Lentivirus-mediated siRNA interference targeting SGO-1 inhibits human NSCLC cell growth REFERENCE 3 (bases 1 to 1548) AUTHORS Kahyo,T., Iwaizumi,M., Shinmura,K., Matsuura,S., Nakamura,T., Watanabe,Y., Yamada,H. and Sugimura,H. TITLE A novel tumor-derived SGOL1 variant causes abnormal mitosis and unstable chromatid cohesion JOURNAL Oncogene 30 (44), 4453-4463 (2011) PUBMED 21532624 REMARK GeneRIF: These results suggest that SGOL1-P1 may function as a negative factor to native SGOL1, and that abundant expression of SGOL1-P1 may be responsible for chromosomal instability. REFERENCE 4 (bases 1 to 1548) AUTHORS Kang,J., Chaudhary,J., Dong,H., Kim,S., Brautigam,C.A. and Yu,H. TITLE Mitotic centromeric targeting of HP1 and its binding to Sgo1 are dispensable for sister-chromatid cohesion in human cells JOURNAL Mol. Biol. Cell 22 (8), 1181-1190 (2011) PUBMED 21346195 REMARK GeneRIF: HP1alpha binding by INCENP or Shugoshin 1 (Sgo1) is dispensable for centromeric cohesion protection during mitosis of human cells, but might regulate yet unknown interphase functions of the chromosome passenger complex (CPC) or Sgo1 at the centromeres. REFERENCE 5 (bases 1 to 1548) AUTHORS Okamoto,N., Kuwahara,K., Ohta,K., Kitabatake,M., Takagi,K., Mizuta,H., Kondo,E. and Sakaguchi,N. TITLE Germinal center-associated nuclear protein (GANP) is involved in mRNA export of Shugoshin-1 required for centromere cohesion and in sister-chromatid exchange JOURNAL Genes Cells 15 (5), 471-484 (2010) PUBMED 20384790 REMARK GeneRIF: Data show that human germinal center-associated nuclear protein (GANP) is critically involved in cell proliferation at the mitotic phase through its selective support of shugoshin-1 mRNA export. REFERENCE 6 (bases 1 to 1548) AUTHORS Wang,X. and Dai,W. TITLE Shugoshin, a guardian for sister chromatid segregation JOURNAL Exp. Cell Res. 310 (1), 1-9 (2005) PUBMED 16112668 REMARK GeneRIF: A comprehensive review of Sgo1 function in eukaryote at meiosis and mitosis. Review article REFERENCE 7 (bases 1 to 1548) AUTHORS McGuinness,B.E., Hirota,T., Kudo,N.R., Peters,J.M. and Nasmyth,K. TITLE Shugoshin prevents dissociation of cohesin from centromeres during mitosis in vertebrate cells JOURNAL PLoS Biol. 3 (3), E86 (2005) PUBMED 15737064 REMARK GeneRIF: A shugoshin-like protein associates with centromeres during prophase and disappears at the onset of anaphase REFERENCE 8 (bases 1 to 1548) AUTHORS Kitajima,T.S., Hauf,S., Ohsugi,M., Yamamoto,T. and Watanabe,Y. TITLE Human Bub1 defines the persistent cohesion site along the mitotic chromosome by affecting Shugoshin localization JOURNAL Curr. Biol. 15 (4), 353-359 (2005) PUBMED 15723797 REFERENCE 9 (bases 1 to 1548) AUTHORS Tang,Z., Sun,Y., Harley,S.E., Zou,H. and Yu,H. TITLE Human Bub1 protects centromeric sister-chromatid cohesion through Shugoshin during mitosis JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (52), 18012-18017 (2004) PUBMED 15604152 REMARK GeneRIF: Bub1 protects centromeric cohesion through Shugoshin in mitosis REFERENCE 10 (bases 1 to 1548) AUTHORS Scanlan,M.J., Gout,I., Gordon,C.M., Williamson,B., Stockert,E., Gure,A.O., Jager,D., Chen,Y.T., Mackay,A., O'Hare,M.J. and Old,L.J. TITLE Humoral immunity to human breast cancer: antigen definition and quantitative analysis of mRNA expression JOURNAL Cancer Immun. 1, 4 (2001) PUBMED 12747765 REMARK Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BG530826.1, AB193056.1 and AB187582.1. On Nov 30, 2010 this sequence version replaced gi:142359926. Transcript Variant: This variant (C2) lacks an in-frame internal exon, as compared to variant A2. The resulting isoform (C2, also known as 1KL) lacks an internal segment, as compared to isoform A2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC017867.1, AB193066.1 [ECO:0000332] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-153 BG530826.1 2-154 154-912 AB193056.1 186-944 913-1548 AB187582.1 898-1533 FEATURES Location/Qualifiers source 1..1548 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="3" /map="3p24.3" gene 1..1548 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /note="shugoshin-like 1 (S. pombe)" /db_xref="GeneID:151648" /db_xref="HGNC:25088" /db_xref="HPRD:12377" /db_xref="MIM:609168" exon 1..148 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(4) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="t" /db_xref="dbSNP:145702873" variation complement(36) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="g" /replace="t" /db_xref="dbSNP:370108487" variation complement(45) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:375306760" variation complement(53) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:140520229" variation complement(60) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:151299371" misc_feature 138..140 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /note="upstream in-frame stop codon" exon 149..297 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" CDS 156..1034 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /note="isoform C2 is encoded by transcript variant C2; shugoshin 1AB protein; shugoshin 1CD protein; shugoshin 1EF protein; shugoshin 1GH protein; shugoshin 1KL protein; hSgo1; serologically defined breast cancer antigen NY-BR-85" /codon_start=1 /product="shugoshin-like 1 isoform C2" /protein_id="NP_612493.1" /db_xref="GI:24308448" /db_xref="CCDS:CCDS2635.1" /db_xref="GeneID:151648" /db_xref="HGNC:25088" /db_xref="HPRD:12377" /db_xref="MIM:609168" /translation="
MAKERCLKKSFQDSLEDIKKRMKEKRNKNLAEIGKRRSFIAAPCQIITNTSTLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECYYLTCQLYALKGKLTSQQTVEPAQNQEICSSGMDPNSDDSSRNLFVKDLPQIPLEETELPGQGESFQIEATPPETQQSPHLSLKDITNVSLYPVVKIRRLSLSPKKNKASPAVALPKRRCTASVNYKEPTLASKLRRGDPFTDLCFLNSPIFKQKKDLRRSKKRALEVSPAKEAIFILYYVREFVSRFPDCRKCKLETHICLR
" misc_feature 219..356 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /note="Shugoshin N-terminal coiled-coil region; Region: Shugoshin_N; pfam07558" /db_xref="CDD:203682" misc_feature 759..836 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /note="Shugoshin C terminus; Region: Shugoshin_C; pfam07557" /db_xref="CDD:191783" variation complement(185) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:143768051" variation complement(217) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:374022493" variation complement(222) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:199815268" variation complement(246) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="g" /replace="t" /db_xref="dbSNP:140691683" variation complement(248) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:202081733" variation complement(254) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:113892853" variation complement(261) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:377471833" variation complement(269) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="g" /replace="t" /db_xref="dbSNP:143576733" variation complement(282) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:145234403" variation complement(291) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:150552043" exon 298..494 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(316) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="t" /db_xref="dbSNP:192601368" variation complement(329) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:200787365" variation complement(345) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:189746950" variation complement(393) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="g" /db_xref="dbSNP:145242036" variation complement(397) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:201174493" variation complement(445) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:202028804" variation complement(467) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:369840848" variation complement(479) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:375511922" variation complement(489) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:183736430" exon 495..571 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(520) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:148317477" variation complement(568) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:147441982" exon 572..630 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" exon 631..820 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(653) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:368034531" variation complement(666) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:375090371" variation complement(671) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="g" /db_xref="dbSNP:199965073" variation complement(678) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:139053195" variation complement(685) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:139869512" variation complement(703) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:146108565" variation complement(734) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:75326306" variation complement(767) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:113607987" variation complement(791) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:149344897" variation complement(792) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:372402306" variation complement(808) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:181464459" exon 821..912 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(822) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /db_xref="dbSNP:13060316" variation complement(884) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:200039832" variation complement(901) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:77194360" exon 913..1546 /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /inference="alignment:Splign:1.39.8" variation complement(916) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:199603756" variation complement(921) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:369926768" variation complement(967) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="g" /db_xref="dbSNP:368430426" variation complement(980) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:151004231" variation complement(985) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:200770059" variation complement(993) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:148485165" variation complement(994) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:375535687" variation complement(1015) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:139865348" variation complement(1034..1036) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="" /replace="aag" /db_xref="dbSNP:147648109" variation complement(1051) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:368161123" variation complement(1060..1061) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="" /replace="tt" /db_xref="dbSNP:200745858" variation complement(1078) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:374709212" variation complement(1079) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:370945018" variation complement(1107) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:191550560" variation complement(1127) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="g" /db_xref="dbSNP:185656328" variation complement(1388) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:140309229" variation complement(1402) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="t" /db_xref="dbSNP:138585609" variation complement(1422) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="g" /db_xref="dbSNP:182471636" variation complement(1448) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="a" /replace="t" /db_xref="dbSNP:189655218" variation complement(1519) /gene="SGOL1" /gene_synonym="NY-BR-85; SGO; Sgo1" /replace="c" /replace="g" /db_xref="dbSNP:150147188" ORIGIN
gaatgtggcggcggtagttccaggcgacggcggacggtggtacggtcctggagggcccagtgcgcggggctagccgtggctggagagcttcgaagagccttgaaatgtgaggaggaggaagatagctgttgcagaagtagtggccaaggcaaaagatggccaaggaaagatgcctgaaaaagtcctttcaagatagtcttgaagacataaagaagcgaatgaaagagaaaaggaataaaaacttggcagagattggcaaacgcaggtcttttatagctgcaccatgccaaataatcaccaacacttctacactgctgaaaaattaccaagacaacaacaaaatgttagttttagctttggaaaatgaaaaatccaaagtgaaagaagcccaagatatcatcctacagctgagaaaagaatgttactatctcacatgtcagctatatgcattgaaaggaaaacttacatcacaacaaacagtagaacctgctcagaaccaggaaatatgttcctctggaatggaccccaatagtgatgacagctccagaaatttatttgtgaaggatttaccgcaaattcctcttgaagaaactgaacttccaggacaaggagaatcatttcaaatagaagctacaccacctgaaactcagcagtcacctcatcttagcctgaaggatatcaccaatgtctccttgtatcctgttgtgaaaatcagaagactttctctttctccaaaaaagaataaagcaagcccagcagtggctctgcctaaacgtaggtgcacagccagcgtgaactataaggagcccaccctcgcttcgaaactgagaagaggggacccttttacagatttgtgttttttgaattctcctattttcaagcagaaaaaggatttgagacgttctaaaaaaagagccctggaggtatcacctgccaaagaagcaatttttattttatattatgttcgagaatttgtttcgagattcccagactgtaggaaatgtaaacttgaaacccacatctgcttgaggtaaagtccacgggcttcacatccttagaaaacttttttagtccatgcattcactaatgtatgcagacctttaatagattctagctttatgtgttgggggagagatggaggggtgttgacagtctgtttcactcagcctacatacataataaaatctaagccctttaattagagatagcaactttcccagggtgaccgaggaatcagtacgtgttgaacccctcttttaagtttccttttggttgtgtcacttggagattgccttttctttcttgtaagctcagctgtgtcctcaaatatattgcattttacccagcatttccaggtgttttcaggggtcaaagtttttaagttatcttagtctttgatattgtgtaagcgaaattctccaatcccatctcctagatgatttttttttaaatcacaaaatgtgattatgcttaacagctgtttcctgtttctcttaaaataaaatccatttcctatttctcttaaaataaaatccattattcttaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:151648 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:151648 -> Biological process: GO:0000278 [mitotic cell cycle] evidence: TAS GeneID:151648 -> Biological process: GO:0007059 [chromosome segregation] evidence: IDA GeneID:151648 -> Biological process: GO:0007067 [mitosis] evidence: IEA GeneID:151648 -> Biological process: GO:0008608 [attachment of spindle microtubules to kinetochore] evidence: IDA GeneID:151648 -> Biological process: GO:0010457 [centriole-centriole cohesion] evidence: IDA GeneID:151648 -> Biological process: GO:0045132 [meiotic chromosome segregation] evidence: IEA GeneID:151648 -> Biological process: GO:0051301 [cell division] evidence: IEA GeneID:151648 -> Cellular component: GO:0000775 [chromosome, centromeric region] evidence: IDA GeneID:151648 -> Cellular component: GO:0000776 [kinetochore] evidence: IDA GeneID:151648 -> Cellular component: GO:0000777 [condensed chromosome kinetochore] evidence: IEA GeneID:151648 -> Cellular component: GO:0000779 [condensed chromosome, centromeric region] evidence: IDA GeneID:151648 -> Cellular component: GO:0000780 [condensed nuclear chromosome, centromeric region] evidence: IEA GeneID:151648 -> Cellular component: GO:0000922 [spindle pole] evidence: IDA GeneID:151648 -> Cellular component: GO:0005813 [centrosome] evidence: IDA GeneID:151648 -> Cellular component: GO:0005829 [cytosol] evidence: TAS GeneID:151648 -> Cellular component: GO:0030892 [mitotic cohesin complex] evidence: IDA
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