GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2025-04-13 08:28:21, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Schizosaccharomyces pombe non-coding RNA (SPOM_SPNCRNA.1289), lncRNA. (1419 bp)
tccataacctaaactgatcactggggagagaaagggtatatttaaccccttccaatagatcctctaaagtactttttgaggaaagagatatttttttaggcttatgagactcattcgcgtccacagcattggtgctcaacagtgttaatgaaaagattggtgggtaaacttcaactaccaaatgaggatgcgactctgagcccaggtttacagtttcccttggaaattcgggtccttttagtccataccagcgaaccaataaatcccatacatctcgagaaatgatggtaaaatcaatctcttcttgcaaatccggcttcaacgttccagtttctaaatcagcaatatcttcttgatctaccggtccaggaaagggaccatcctctgccaaatacgagcagagtcgttcataccaactatacgaaagaatgtaattgtcaacctgtcccaactcaagttcgggttgattgtttaccaactcgcctattaactgcttttgttctgcaatagaaggaaggttctttgatatttctgaagcatcacccaaagatattgatttttgtgaaatatcatccatgttggaagagctttgcgattcct...
position 715
NR_150157.1 - Schizosaccharomyces pombe (fission yeast) - NCBI - PomBase
Schizosaccharomyces pombe non-coding RNA (SPOM_SPNCRNA.2679), lncRNA. (2153 bp)
gtaattataaaattaaatatcaacaaagaatacttacctgaaccacaagatggtctttgaacacatgcttaacgaccttaacaacaaattcagtttcctgctcagtgagctcaataggtgacggcgatgatttcagtactgggccatattcattaaattctgaaacggattctaatgcgtttaaaaactcggtttcaatgttagaactggcaagagcattttggtcctcagcaggagtaacctctgtaaactctacctctgtcgtggcctttttgattctcaaattctcagcatcaatctcttcttgagatagtacgggcacagatttgatatcaaagccttgtccgaacttcctttcagaaatatatataacaaggctacgctctaaagcaggtaatgagggaattttatcagatttaaccactggcaaaaatgcatctctatcctcaagcgcctttacactaaaagcagcacgatcacgaacctcgtcatcagcatcttccaaacaccttgtgagaataaccttaacactccgttggacaaatttatcttccgcattcaatccaaatttggtcaaagcgctaacggcagcggaacgta...
position 300
NR_192047.1 - Schizosaccharomyces pombe (fission yeast) - NCBI - PomBase
Schizosaccharomyces pombe coatomer gamma subunit Sec21 (sec21), mRNA. (3122 bp)
gtacgttccgctgccgttagcgctttgaccaaatttggattgaatgcggaagataaatttgtccaacggagtgttaaggttattctcacaaggtgtttggaagatgctgatgacgaggttcgtgatcgtgctgcttttagtgtaaaggcgcttgaggatagagatgcatttttgccagtggttaaatctgataaaattccctcattacctgctttagagcgtagccttgttatatatatttctgaaaggaagttcggacaaggctttgatatcaaatctgtgcccgtactatctcaagaagagattgatgctgagaatttgagaatcaaaaaggccacgacagaggtagagtttacagaggttactcctgctgaggaccaaaatgctcttgccagttctaacattgaaaccgagtttttaaacgcattagaatccgtttcagaatttaatgaatatggcccagtactgaaatcatcgccgtcacctattgagctcactgagcaggaaactgaatttgttgttaaggtcgttaagcatgtgttcaaagaccatcttgtggttcagtttcaacttcataacactctgtccgaagttatccta...
position 1894
NM_001018803.3 - Schizosaccharomyces pombe (fission yeast) - NCBI - PomBase
Schizosaccharomyces pombe CSN-associated deubiquitinating enzyme Ubp12 (ubp12), mRNA. (3603 bp)
gaggaatcgcaaagctcttccaacatggatgatatttcacaaaaatcaatatctttgggtgatgcttcagaaatatcaaagaaccttccttctattgcagaacaaaagcagttaataggcgagttggtaaacaatcaacccgaacttgagttgggacaggttgacaattacattctttcgtatagttggtatgaacgactctgctcgtatttggcagaggatggtccctttcctggaccggtagatcaagaagatattgctgatttagaaactggaacgttgaagccggatttgcaagaagagattgattttaccatcatttctcgagatgtatgggatttattggttcgctggtatggactaaaaggacccgaatttccaagggaaactgtaaacctgggctcagagtcgcatcctcatttggtagttgaagtttacccaccaatcttttcattaacactgttgagcaccaatgctgtggacgcgaatgagtctcataagcctaaaaaaatatctctttcctcaaaaagtactttagaggatctattggaaggggttaaatataccctttctctccccagtgatcagtttaggttatgg...
position 422
NM_001023518.3 - Schizosaccharomyces pombe (fission yeast) - NCBI - PomBase
Schizosaccharomyces pombe cytoplasmic poly(A) polymerase Cid13 (cid13), mRNA. (3454 bp)
aacgctaattgcgttggcggttgcaaatttgaaactcgcagctttcaatatagaaggcgtattccttatagcctcggtgcggatccacttccgccagtacatcctctatcattaaagaatttagttgatattgatactgatctaatttcttctcaactgtacgagttgtatgactctattatactgaacgactcgggtttagaacgtcgatatgcatttgtgcagaaactcgaacaaatattgaaaaaagaattcccctataaaaatatcaaaacctccctttttgggtcaacccaatctcttcttgccagcaatgcatcagacattgatttgtgtatcattactgatccgcctcaatgtgctccaacgacctgcgaggtgtcagctgcctttgctaggaacggacttaaaaaggtcgtttgcatttcaacagctaaagtgccaattgtaaaggtttgggactcagaattacaactatcatgcgattgcaatatcaataaaactatatctaccttaaacacgcgtttgatgcgctcttacgttctttgtgatccccgagttcggcccttgattgttatgattaaatattgggcaaaaaga...
position 574
NM_001018555.3 - Schizosaccharomyces pombe (fission yeast) - NCBI - PomBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/sp/both%3acaagaagagattg
lang : en | div : | spe : sp | query_string : both:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.321 | 0.321 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Schizosaccharomyces pombe (fission yeast)?to=0&format=json
0.629 | 0.308 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Schizosaccharomyces pombe (fission yeast)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.630 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]