LOCUS       NM_001180809            1566 bp    mRNA    linear   PLN 17-DEC-2024
DEFINITION  Saccharomyces cerevisiae S288C Plm2p (PLM2), partial mRNA.
ACCESSION   NM_001180809
VERSION     NM_001180809.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Jacq,C., Alt-Morbe,J., Andre,B., Arnold,W., Bahr,A., Ballesta,J.P.,
            Bargues,M., Baron,L., Becker,A., Biteau,N., Blocker,H., Blugeon,C.,
            Boskovic,J., Brandt,P., Bruckner,M., Buitrago,M.J., Coster,F.,
            Delaveau,T., del Rey,F., Dujon,B., Eide,L.G.,
            Garcia-Cantalejo,J.M., Goffeau,A., Gomez-Peris,A., Zaccaria,P. et
            al.
  TITLE     The nucleotide sequence of Saccharomyces cerevisiae chromosome IV
  JOURNAL   Nature 387 (6632 SUPPL), 75-78 (1997)
   PUBMED   9169867
REFERENCE   3  (bases 1 to 1566)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   4  (bases 1 to 1566)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1566)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 1566)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2013) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   7  (bases 1 to 1566)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   8  (bases 1 to 1566)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   9  (bases 1 to 1566)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001136).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="mRNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="IV"
     gene            <1..>1566
                     /gene="PLM2"
                     /locus_tag="YDR501W"
                     /db_xref="GeneID:852112"
     CDS             1..1566
                     /gene="PLM2"
                     /locus_tag="YDR501W"
                     /experiment="EXISTENCE:direct assay:GO:0000785 chromatin
                     [PMID:12464632]"
                     /experiment="EXISTENCE:direct assay:GO:0003682 chromatin
                     binding [PMID:12464632]"
                     /experiment="EXISTENCE:genetic interaction:GO:0006974 DNA
                     damage response [PMID:12760057]"
                     /note="Putative transcription factor, contains Forkhead
                     Associated domain; found associated with chromatin; target
                     of SBF transcription factor; induced in response to DNA
                     damaging agents and deletion of telomerase; PLM2 has a
                     paralog, TOS4, that arose from the whole genome
                     duplication"
                     /codon_start=1
                     /product="Plm2p"
                     /protein_id="NP_010789.1"
                     /db_xref="GeneID:852112"
                     /db_xref="SGD:S000002909"
                     /translation="

MSHLFPPSSPVAGKPLESPQKEPGKLANTSVLTLGRKRYNYELEEYPTPDPSSSIGRQSSPVKDITSRLNETKSALSSPSKQEKVLAGPIEIELDASDPSRLAIGRKKSVCNIILPCRKNISRQHAFISYAADRNEIKLECNGTNGLSVHLPYSMQLHLVKPFPTRNFYKLVAEEPLTSQNTKQSHGKTLQKNQNFISFVLAKGETVTFPYIQGSFINFTGVTVCLSLKKVAPYPGDGNNNFDEENSTETEDELCLLTTTSDDFSWQKETPSMKFVPVEHSPRTEQISKPLLIASPALVKNSPISYRTTPQTSFVINQPSTPKKLKRKSISLKNNTIQETPLPKDKIIGTLSASTRSGGINEEESFAAVAKKTKELSSTTAIVSPAQKRLKTSLNIIPEISRSLSERGIRFDDLVHVLCNHLAFSNLQQTPLSQLQNINSNTSQLSKDELKKVLETISCIGIIVREGKDASGKPLEDEYYYDVENDDSDERKILYNSLKGRSRLRSCRKKHKQYFWKRPTK"

     misc_feature    238..660
                     /gene="PLM2"
                     /locus_tag="YDR501W"
                     /note="forkhead associated (FHA) domain found in
                     Saccharomyces cerevisiae plasmid maintenance protein 2
                     (PLM2) and similar proteins; Region: FHA_PLM2-like;
                     cd22699"
                     /db_xref="CDD:438751"
     misc_feature    order(313..318,364..369,373..375,427..429,433..438)
                     /gene="PLM2"
                     /locus_tag="YDR501W"
                     /note="putative phosphopeptide binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:438751"
ORIGIN      

atgtcccatctcttcccaccatcatcaccagttgctggtaaacctttggaaagcccacaaaaagaacctggtaagcttgctaatacttctgtattgaccttaggaagaaaacggtataattacgaattggaagagtatcctactccagacccgtcgtctagcatcggaagacaatcttcaccagtgaaagatatcacttcacgtttaaatgagaccaaatctgccttgtcatctccttcaaagcaagaaaaggtgcttgcaggccctatcgagattgaattagatgcatcggatccctcacgtttagccatcggtaggaaaaaatcagtctgcaacattattttgccatgcagaaagaatatctctaggcagcacgcttttatttcatacgccgccgacagaaatgaaataaaattggaatgtaatggaactaatgggttgtccgttcacttgccttactccatgcagttgcatttggtaaaacccttcccaacaaggaacttttataaactagtggcagaagagcctttgacctcgcaaaatactaaacaatcgcatggaaaaactcttcaaaagaaccaaaacttcatcagctttgttttggctaaaggtgaaactgttactttcccctatatccaaggaagtttcataaattttacaggcgtcacagtctgtctttcattgaaaaaagtagcaccttatcctggcgatggcaacaataactttgacgaagagaactcgacagaaacggaggatgagttgtgtttattaacaacaacgagcgatgatttttcttggcaaaaagaaacaccttcgatgaaatttgtcccagttgagcattcacctcgtacagaacagatctcaaaaccattacttattgcatctcctgctcttgtgaaaaactcccccattagttatagaacaacaccccaaacatctttcgttattaatcagccatcaactccaaagaaactgaagcgtaaatcaatttcattgaaaaataacactatacaagagacaccacttcctaaagataaaataattgggacattaagtgccagtactaggagtggtggcattaatgaagaagaatctttcgcagcagttgcaaaaaaaactaaagagctgtcttctacaaccgcgattgtatctcctgcacaaaaacgtcttaagacttcattgaatattattcccgaaatttctcggtcgctctcagaaagaggaattcggtttgatgacctagttcatgtgctatgtaatcatcttgcattttctaaccttcaacaaacgcctttatcccaattgcaaaacatcaattccaacacttcacaattaagcaaagatgaactaaaaaaggtcttggagactatttcttgcattggtattattgtgcgtgaaggaaaagatgcgtctggcaagccattagaagacgagtattactatgatgttgaaaacgatgatagcgacgagagaaagattttgtataattcgttaaaaggcaggagccgattaaggtcgtgcaggaagaaacataaacagtatttctggaagaggccgaccaaataa

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